PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13008s0001.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31509.1 Da    PI: 10.3563
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13008s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind362.96.1e-11112811301
             GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd..maflqrdkalaernkalverdnkll 82 
                           mdddg+  rn+gyyepa as+k nlglqlms+i +r++k+    re+nl ++++++++++r+  m++    +++++      ++dnk++
  Araha.13008s0001.2.p   1 MDDDGF--RNWGYYEPAaASFKGNLGLQLMSTI-DRNTKPflpgRESNL-MIGSNGSYHPREhdMNY----SWINQ------PKDNKFF 75 
                           99**99..9*******99***************.9**************.********988655999....*****......******* PP

             GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
                           ++l++++      p++ +v+s+t+  +s+q++++p ++ s +e         +   e ++ +k++k++ + ++++ pk+kk++k+k+++
  Araha.13008s0001.2.p  76 NMLPIST------PNYGSVMSETSGSNSMQMIHQPVVNSSRFEEIPIP---PPREDEIVQPSKKRKMRGSISTPTIPKAKKMRKPKEER 155
                           ****766......89999*************99998888888733333...333344566778888899999***************88 PP

             GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
                            +++++v+++    r+k  kks+dlv+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRi+grKm
  Araha.13008s0001.2.p 156 GVTNNNVQQQ----RVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGRKM 240
                           7776666655....589************************************************************************ PP

             GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           Sqgafkk+LekLa+eGy+++n++DLk+hWA+HGtnkfvtir
  Araha.13008s0001.2.p 241 SQGAFKKVLEKLATEGYSFGNAIDLKSHWARHGTNKFVTIR 281
                           ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.2E-1001281IPR010409GAGA-binding transcriptional activator
SMARTSM012262.8E-1711281IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAASFK GNLGLQLMST IDRNTKPFLP GRESNLMIGS NGSYHPREHD  60
MNYSWINQPK DNKFFNMLPI STPNYGSVMS ETSGSNSMQM IHQPVVNSSR FEEIPIPPPR  120
EDEIVQPSKK RKMRGSISTP TIPKAKKMRK PKEERGVTNN NVQQQRVKPV KKSVDLVING  180
VSMDISGLPV PVCTCTGTPQ QCYRWGCGGW QSACCTTNIS VYPLPMSTKR RGARISGRKM  240
SQGAFKKVLE KLATEGYSFG NAIDLKSHWA RHGTNKFVTI R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13008s0001.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072650.0AC007265.5 Arabidopsis thaliana chromosome 2 clone F23I14 map CIC11A04, complete sequence.
GenBankAY0652250.0AY065225.1 Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds.
GenBankAY0965500.0AY096550.1 Arabidopsis thaliana unknown protein (At2g01930) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880017.10.0protein BASIC PENTACYSTEINE1
RefseqXP_020880018.10.0protein BASIC PENTACYSTEINE1
SwissprotQ9SKD00.0BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLD7LPX40.0D7LPX4_ARALL; Basic pentacysteine 1
STRINGfgenesh2_kg.5__107__AT2G01930.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.20.0basic pentacysteine1