PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12619s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 604aa    MW: 67445.3 Da    PI: 4.4544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12619s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08445486144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           r rW++++ el++++++++G++  + I + ++ +Rt++q k+++
  Araha.12619s0004.1.p 445 RTRWSKQDTELFYEGIQEFGSN-LSMIQQLFP-NRTREQMKLKF 486
                           78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159637.0E-26438522No hitNo description
SuperFamilySSF466893.51E-9439493IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-6442487IPR009057Homeodomain-like
PROSITE profilePS5129310.169443494IPR017884SANT domain
SMARTSM007174.1E-7444492IPR001005SANT/Myb domain
CDDcd001675.56E-5447487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLTT SQTTLSTDAA KEKLSTQNED  60
PVPLDGSLEI PSNALPSETN VPDSGTINKS TLGTLSEENV DVFPKGVHWS TRPSILRACN  120
NVDLVGKRCG DGIEAASSFP DDPRTQDSTI FGDYVTPETG EDEGHVDMET LDIVQEEGTT  180
SSYVQHTGKL QPKPRILDTV VEESEPHYSA GDTGYFPMGS NESEFMVNVE SRNGFSTYGD  240
TQEEEHNIPE APREMVHEME ARNASGGWEH EEQGVSPCTN NTVTGEEENC LGKTVEEQSG  300
KESKTGKSKR ATSRKRKKTS EEPNKSSEKT EKKKFKHSSR RQKRTLEKEL LETPDNEIRS  360
LPLRDMLRLV EYKEWMEKKE AKGAGVQPSQ ESNMNASESQ YHSQGFDAED EFGEFGIESS  420
ENQEHYVVKP DSPVNYQTYM NKTSRTRWSK QDTELFYEGI QEFGSNLSMI QQLFPNRTRE  480
QMKLKFKLEE RRNPLKLNDA LSSRSKHFTH FKNVIKKLQQ EAAAAKEAEE EEAGTEAETP  540
DVPENEEPEK SEETERASDG GAAGVKESDG GDIENGVRSD GGDECEDDEG DDDDFWNSYK  600
SDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12619s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234410.0BT023441.1 Arabidopsis thaliana At4g39160 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866831.10.0transcription factor TFIIIB component B'' homolog
RefseqXP_020874413.10.0transcription factor TFIIIB component B'' homolog
TrEMBLD7MGC00.0D7MGC0_ARALL; DNA binding protein
STRINGfgenesh2_kg.7__120__AT4G39160.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein