PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12533s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 129aa    MW: 15003.1 Da    PI: 8.8325
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12533s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind61.32.5e-191483271
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
          HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71
                          F kkly++++d+++++++sws+ng+sf++++e ef ++vLp++   +++a F+R L   gFkk++++e +
  Araha.12533s0002.1.p 14 FRKKLYKMVDDPSTNSIVSWSDNGKSFIIWNEPEFCRDVLPRFSHYKEMAPFIRRLGNMGFKKIESKELE 83
                          889***************************************9999******************998844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-24795IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-2110106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-221195IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-101437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-181495IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-105264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-106577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDRDNNHKDR CLYFRKKLYK MVDDPSTNSI VSWSDNGKSF IIWNEPEFCR DVLPRFSHYK  60
EMAPFIRRLG NMGFKKIESK ELEYGSDDFV RGHPEPDLSP EAVRARLKEL ALASRKELCG  120
SKTLRSDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-151495489Putative transcription factor
5d5x_B1e-151495489Putative transcription factor
5d5x_E1e-151495489Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12533s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0106951e-40AB010695.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDK4.
GenBankCP0026881e-40CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340391.11e-26heat stress transcription factor 29
RefseqXP_028191561.11e-26heat stress transcription factor A-4a-like
TrEMBLD7MU836e-55D7MU83_ARALL; Uncharacterized protein
STRINGBostr.3359s0057.1.p7e-57(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-23HSF family protein