PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12369s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 643aa    MW: 71305.7 Da    PI: 5.0468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12369s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09554602348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           +WT  E  +lv++v ++G g W+ I ++       Rt  ++k++w+++l
  Araha.12369s0005.1.p 554 AWTLSEVTKLVEGVSKYGAGKWSEIKKHSFssySYRTSVDLKDKWRNLL 602
                           7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.123547606IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-14549608IPR009057Homeodomain-like
SMARTSM007171.9E-10551604IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-16553612IPR009057Homeodomain-like
CDDcd116604.07E-21553603No hitNo description
PfamPF002492.8E-7554602IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MGTVVGTVED RRDMFEGSAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV  60
NETDMHIASD ACQTVGYLAT DEENSEVNET DMHIASDACQ TVGYLPAEVI PSRLSQLESS  120
EAINSGLLQY DNVQPYTDQY NEEMSQKVEQ EERLGNVHGS QMPSTPPDAN IQCSNDNNFF  180
EEDQVHHEAL LQEPIPFSLN VQDECKMNES DKIERCSNAA TSPKETTLSA AAKKPDFSRV  240
RGEICLDNLP IKALQETFRA TFGRETTVKD KTWLKRRIAM GLINSCDVPT TNLRVKDNKL  300
VGNQEKSNDV TNAISNDMGD DVRATKVKDA PSSTDHVKGH SNASGNILGG NHYYVSDDYS  360
SEQRAAKRVR KPTRRYIEEL SETDEKQQNE KSMIPSKDQR LSAEKSEVRS ISVSSGKRVT  420
VTRMVSLAGS EIEVPYVSHV RRSRPRENIM ALMGCHSSCL EDKTSATESN LNLSPSQLSS  480
DVVNRDSVEN SASRPVQKEF ATSDDNNEEH IVSEVDQDME PEDTESSGNS SDDNNNIGVP  540
IMQGGTLRRK HHRAWTLSEV TKLVEGVSKY GAGKWSEIKK HSFSSYSYRT SVDLKDKWRN  600
LLKSSFAQSP SHSTGNLKKH GSMHIPTQIL LQVRELAEKQ SQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12369s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
GenBankAY1248680.0AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195400.0AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865949.10.0uncharacterized protein LOC9323508 isoform X4
TrEMBLQ94AX90.0Q94AX9_ARATH; At1g72650/F28P22_16
STRINGfgenesh2_kg.2__1530__AT1G72650.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6