PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12285s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 263aa    MW: 30072.5 Da    PI: 8.2398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12285s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-141259148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l   +  +G  +W+t++ + g+ R +k+c++rw +yl
  Araha.12285s0007.1.p 12 KGLWSPEEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 59
                          678*******************************************97 PP
2Myb_DNA-binding42.12e-1369110548
                           -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++eE++ ++  +  lG++ W+ Ia+ ++ gRt++++k++w+++l
  Araha.12285s0007.1.p  69 SAEEEDTILTFHSSLGNK-WSQIAKFLP-GRTDNEIKNYWHSHL 110
                           89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.841763IPR017930Myb domain
SuperFamilySSF466893.52E-279106IPR009057Homeodomain-like
SMARTSM007179.9E-101161IPR001005SANT/Myb domain
PfamPF002495.2E-121259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-201366IPR009057Homeodomain-like
CDDcd001671.54E-71559No hitNo description
SMARTSM007175.1E-1264112IPR001005SANT/Myb domain
PROSITE profilePS5129416.34564114IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2367113IPR009057Homeodomain-like
CDDcd001676.70E-969110No hitNo description
PfamPF002494.3E-1269110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAKTKSGERQ RKGLWSPEED EKLRSFILSH GHSCWTTVPI KAGLQRNGKS CRLRWINYLK  60
PGLKRDMISA EEEDTILTFH SSLGNKWSQI AKFLPGRTDN EIKNYWHSHL KKRWLKSQSL  120
QHPKSVSSSS SSSSLVACGK RNPETLISDQ VISFQRLLED KSSSPSQESN GNNSYQCSSA  180
PEIPRLFFSE WLSFSHPHID YSSDFTDSKH NQATNVEETV SAYEEMGDVD QFHYNEMMIN  240
NSNWTLNDVV FGSKCKKQEH HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12285s0007.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196090.0AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869667.10.0transcription factor LAF1
SwissprotQ9M0K41e-173LAF1_ARATH; Transcription factor LAF1
TrEMBLD7MFZ61e-179D7MFZ6_ARALL; AtMYB18
STRINGfgenesh1_pg.C_scaffold_70014011e-180(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-174myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]