PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12093s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 154aa    MW: 17168.4 Da    PI: 9.8145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12093s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-173079255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+G+r++k +g+WvAeIr+p   +kr r +lg++ t   Aa+a++ a  +l+g
  Araha.12093s0003.1.p 30 PYRGIRRRK-WGKWVAEIREP---NKRSRLWLGSYTTDVAAARAYDVAVFYLRG 79
                          69****998.**********9...336**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0243087IPR001471AP2/ERF domain
SMARTSM003805.4E-363093IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213088IPR016177DNA-binding domain
PRINTSPR003673.8E-123142IPR001471AP2/ERF domain
CDDcd000185.24E-263189No hitNo description
PfamPF008471.8E-113179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-303188IPR001471AP2/ERF domain
PRINTSPR003673.8E-126989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEREQEESTM RKRRQPPQEE MASHVATRKP YRGIRRRKWG KWVAEIREPN KRSRLWLGSY  60
TTDVAAARAY DVAVFYLRGP SARLNFPDLL LQEDDHRSAA TTADMPAALI REKAAEVGAR  120
VDALLASAAP STADSSPPVI KPDLNQIPES GDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1526871072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914MRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12093s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0838351e-175AC083835.5 Arabidopsis thaliana chromosome 1 BAC F2G19 genomic sequence, complete sequence.
GenBankAY0868381e-175AY086838.1 Arabidopsis thaliana clone 28451 mRNA, complete sequence.
GenBankBT0246911e-175BT024691.1 Arabidopsis thaliana At1g46768 mRNA, complete cds.
GenBankCP0026841e-175CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322276.11e-101related to AP2 1
RefseqNP_564496.11e-101related to AP2 1
SwissprotQ8LC301e-102RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLD7KPW51e-104D7KPW5_ARALL; Uncharacterized protein
STRINGscaffold_104275.11e-105(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.16e-80related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]