PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11810s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 678aa    MW: 75963.2 Da    PI: 6.0649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11810s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.7e-102386097
                          EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                          +l++GWk+FvkangLk+gD+ +Fkl + +++ +v++++
  Araha.11810s0001.1.p  2 TLGDGWKSFVKANGLKTGDTYTFKLYW-EDTIPVLSLC 38
                          699*********************999.6666787777 PP
2B365.76.6e-21108197497
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                            ++++d+l++grl+lp +f++e++++k++  ++tl  ++g +W   l    ++gr+ l+kGWk+F+kang+k+gD+++++ ++ +++++
  Araha.11810s0001.1.p 108 LTITPDSLEHGRLRLPLQFMTENSMNKPG--EITLLGKDGAKWMASLL-LERRGRMSLGKGWKDFAKANGVKTGDSITLESIW-EDTTP 192
                           6789*******************999766..8***************5.55556789***********************999.88889 PP

                           EEEEE CS
                    B3  93 vvkvf 97 
                           v+k++
  Araha.11810s0001.1.p 193 VLKLL 197
                           99886 PP
3B367.61.8e-21442533196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+lk+grl+lp +f++e++++k++  ++t+  ++g +W v l    ++gr+ l+kGWk+F+k +gLk+gD+++++ ++ ++
  Araha.11810s0001.1.p 442 FLTLTITPDSLKHGRLRLPLQFMTENSMNKPG--EITVLGKDGAKWLVSLL-LERRGRMSLGKGWKDFAKKHGLKTGDSITLESIW-ED 526
                           778899********************999766..7***************5.55556789***********************999.77 PP

                           E..EEEE CS
                    B3  90 felvvkv 96 
                           +++v+k+
  Araha.11810s0001.1.p 527 ASPVLKL 533
                           7788776 PP
4B350.63.4e-16579667597
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++ +   k g+l lp +f++ +g++k++  ++tl  + g +W  +l    ++g++vl++GWk+F++ang+  g++++++++++++++ v
  Araha.11810s0001.1.p 579 TLAPEDVKDGNLHLPIQFMRINGINKPG--KITLLGRGGLKWFAYL--LSRDGTVVLGNGWKGFCEANGVMLGETFILEFISKEDTNHV 663
                           44455556666********999999766..8***************..99999****************************99988888 PP

                           EEEE CS
                    B3  94 vkvf 97 
                           +k++
  Araha.11810s0001.1.p 664 FKFY 667
                           8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.44E-7139No hitNo description
PROSITE profilePS5086311.476141IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-9242IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-8239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-8240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1998195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-21101196IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-17104198No hitNo description
PROSITE profilePS5086314.706105200IPR003340B3 DNA binding domain
SMARTSM010191.8E-30105200IPR003340B3 DNA binding domain
PfamPF023622.8E-20107198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-4263295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-21436532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-21438533IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-21442533IPR003340B3 DNA binding domain
CDDcd100173.60E-18442534No hitNo description
PROSITE profilePS5086315.101442537IPR003340B3 DNA binding domain
SMARTSM010192.0E-29442537IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-18568666IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21569667IPR015300DNA-binding pseudobarrel domain
CDDcd100177.12E-13574667No hitNo description
PfamPF023622.1E-15575668IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422575670IPR003340B3 DNA binding domain
SMARTSM010198.8E-22575670IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MTLGDGWKSF VKANGLKTGD TYTFKLYWED TIPVLSLCPE EYNTDTRVGE ECSKESLPTE  60
PSSQEKIIKD DNNKHEYNKD ESSLWKREDN HLRCIDSTSP SENRILTLTI TPDSLEHGRL  120
RLPLQFMTEN SMNKPGEITL LGKDGAKWMA SLLLERRGRM SLGKGWKDFA KANGVKTGDS  180
ITLESIWEDT TPVLKLLSIE SSSGHFSKES LSVEPSSGNM TEKAEKNREA SRKYPPRSRE  240
SSSAIENQFM ALTPQRDIIS QVAHDLRIGE IIIFRHEGDN MLQVSDLGPN CCGIRDVPAP  300
SSNNDHDNIG TISMEMHPLL RKEAGFSSYD GYAHENFEHP SKKKVKKNNP ETEADYLSDH  360
SCSVAHVTTS SLHANALSLA VKESITIEPS IDDNNKDESS KEENDIEENS NNKNNIEESS  420
SFEREKNHRI CIDSISSSHN RFLTLTITPD SLKHGRLRLP LQFMTENSMN KPGEITVLGK  480
DGAKWLVSLL LERRGRMSLG KGWKDFAKKH GLKTGDSITL ESIWEDASPV LKLLHIESGQ  540
SEFSKESPFI DASSGHKTRE AEKNRDSSSE IENRFLTLTL APEDVKDGNL HLPIQFMRIN  600
GINKPGKITL LGRGGLKWFA YLLSRDGTVV LGNGWKGFCE ANGVMLGETF ILEFISKEDT  660
NHVFKFYSSY GDQIHKC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11810s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069540.0AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883518.10.0B3 domain-containing protein REM-like 1, partial
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLD7LIB50.0D7LIB5_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_40003310.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]