PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11660s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 139aa    MW: 16309.5 Da    PI: 9.9493
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11660s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-1246100458
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                            ++ rrk +NRe+ArrsR RK+  ++eL     +L ++Nk L +el++ ++ ++k
  Araha.11660s0004.1.p  46 ERKRRRKVSNRESARRSRMRKQRHMDELWSMLVQLINKNKCLVDELSRAREDYEK 100
                           467899*********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-1038100No hitNo description
SMARTSM003381.4E-1343107IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.71445108IPR004827Basic-leucine zipper domain
PfamPF001705.7E-1047100IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-104798No hitNo description
CDDcd147021.07E-144898No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAGFVYNLPC ENPNPKSLFQ TFVDRVPLLN LHATSDDSSR SAQDDERKRR RKVSNRESAR  60
RSRMRKQRHM DELWSMLVQL INKNKCLVDE LSRAREDYEK VIEENMKLRE ENSKSRKTIG  120
EIGLNRFPNA EADQIWTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14650RKRRR
25966RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11660s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0116651e-160AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-160AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF4006211e-160AF400621.1 Arabidopsis thaliana transcription factor-like protein bZIP8 mRNA, complete cds.
GenBankBT0248171e-160BT024817.1 Arabidopsis thaliana At1g68880 gene, complete cds.
GenBankCP0026841e-160CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888689.19e-84basic leucine zipper 8
SwissprotQ9CA465e-82BZIP8_ARATH; Basic leucine zipper 8
TrEMBLD7KWW12e-82D7KWW1_ARALL; BZIP transcription factor family protein
STRINGfgenesh2_kg.2__1145__AT1G68880.13e-83(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.12e-84basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]