PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11658s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 612aa MW: 66947.8 Da PI: 5.098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 434 | 479 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Araha.11658s0006.1.p 434 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 479 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.8E-55 | 58 | 241 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-18 | 433 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-14 | 433 | 484 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.2E-18 | 434 | 498 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 434 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 436 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MNGTTSSINF LTSDDDASAA MEAFIGTNHH HHHSSLFPPP PQPPPSSFPQ TQFNEDTLQQ 60 RLQALIESAG ENWTYAIFWQ ISHDFDSSTG DNTVILGWGD GYYKGEEDKE KKKNNANTAE 120 QEHRKRVIRE LNSLISGGIG VSDESNDEEV TDTEWFFLVS MTQSFVNGVG LPGESFLNSR 180 VIWLSGSGSL TGSGCERAGQ GQIYGLKTMV CIATQNGVVE LGSSEVISQS SDLMDKVNNL 240 FNFNNGGGNN GGEASSWGFN LNPDQGENDP ALWISEPTNT GIESPARVSN GNNSNSNSKS 300 DSHQISKLDK NDISSVENQN RQSSCLVERD LNFSSSGLNQ NGNFQGGLLK SNETLSFCGN 360 ESSKKRSPVS KGSNNDEGML SFSTVVRSAA KSVDSDHSDL EASVVKEAIV VEPPEKKPRK 420 RGRKPANGRE EPLNHVEAER QRREKLNQRF YSLRAVVPNV SKMDKASLLG DAISYINELK 480 SKLQQAESDK EEIQKKLDGM SKEGNNGKGG GSRAKERKCS NQDSTASSIE MEIDVKIIGW 540 DVMIRVQCSK KDHPGARFME ALKELDLEVN HASLSVVNDL MIQQATVKMG SQFFNHDQLK 600 VALMTKVGEN Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 1e-136 | 5 | 237 | 1 | 227 | Transcription factor MYC3 |
4ywc_A | 1e-136 | 5 | 237 | 1 | 227 | Transcription factor MYC3 |
4ywc_B | 1e-136 | 5 | 237 | 1 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 415 | 423 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00085 | PBM | Transfer from AT5G46760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11658s0006.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016882 | 0.0 | AB016882.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865164.1 | 0.0 | transcription factor MYC3 | ||||
Swissprot | Q9FIP9 | 0.0 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | D7MQP8 | 0.0 | D7MQP8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_800152.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.11658s0006.1.p |