PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.11551s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 38300.6 Da PI: 7.2031 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 1e-10 | 288 | 333 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq Araha.11551s0007.1.p 288 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 333 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.656 | 282 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-14 | 285 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.44E-11 | 286 | 337 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-13 | 287 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-12 | 288 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-8 | 288 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSLLNSVVDE VIGGGASNAR DFTGYQPSSD 60 NFIGNFFTGA DSSSLRSDST TCGVNSSDGQ KQLGNDNKDI FLDRTYGGFN EISQQHKSND 120 IGGNSSGSSY SLTRQRSSPA DFFTYLSADK NNFSLNQPTS DYNPQGGSNA GRGHSRLKSQ 180 LSFTSHDSLA RINEVNETPI HDGSGHSFSA ASFGAAATDS WDDGSGSIGF TVTRPNKRSK 240 DMDSGLFSQY SLPSDTSMNY MDNFMQLPED SVPCKIRAKR GCATHPRSIA ERERRTRISG 300 KLKKLQDLVP NMDKQTSYSD MLDLAVQHIK GLQHQLQNLK KDQENCTCGC SERPS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.11551s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY086106 | 0.0 | AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_563749.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q8H102 | 0.0 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A178W6Y0 | 0.0 | A0A178W6Y0_ARATH; Uncharacterized protein | ||||
STRING | AT1G05805.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11777 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05805.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.11551s0007.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|