PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1146s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 416aa    MW: 46888.6 Da    PI: 5.3625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1146s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.74.3e-31310332128
                  NAM  32 evikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117
                          e+i+e++i++++P  Lp  +k+k+++  wyfF++++ ++a++k ++r+t+sgyWkatg d+++++k  ++ ++g+kktLv+y+gr pkg+
  Araha.1146s0008.1.p   3 EAISEINICSYDPIYLPslSKLKSDDPVWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKrgNRGEIGIKKTLVYYEGRVPKGV 92 
                          579**************5448888999**************************************9666667****************** PP

                  NAM 118 ktdWvmheyrl 128
                           t Wvmhey++
  Araha.1146s0008.1.p  93 WTPWVMHEYHI 103
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.7731121IPR003441NAC domain
SuperFamilySSF1019411.19E-343121IPR003441NAC domain
PfamPF023655.9E-1526103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
VDEAISEINI CSYDPIYLPS LSKLKSDDPV WYFFCPKEYT SAKKKVTKRT TSSGYWKATG  60
VDRKIKDKRG NRGEIGIKKT LVYYEGRVPK GVWTPWVMHE YHITCLPQDQ RNYVICQVMY  120
KGEDGDVPSG GNNASEPSQS MVSDSGTVRA IDTAPEPGQE NFFGISVDDL RTPMNEQKQE  180
DFSLWDVLDP DMLFSDNNNS TVQPQAPHLA PNDDEFLGGL RHVNREQVEY LFANEDLISR  240
PTLSMTENRN DHRPKKALSG IIVDYSSDSN SDAESISATS YQGTSSPGDD SVGSLNRRFL  300
QTGGDEILSS SNDLQTYGEL SISRRTRQSQ LTLHIIQSKQ EVKQDTSRAV DSDTYIDKAS  360
SMMKTEKKSW FIREEPMERN RKNPRYIYLM RMIIGIILLV ALIGNIISVL LTVKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-18312147165NO APICAL MERISTEM PROTEIN
1ut4_B5e-18312147165NO APICAL MERISTEM PROTEIN
1ut7_A5e-18312147165NO APICAL MERISTEM PROTEIN
1ut7_B5e-18312147165NO APICAL MERISTEM PROTEIN
3swm_A6e-18312150168NAC domain-containing protein 19
3swm_B6e-18312150168NAC domain-containing protein 19
3swm_C6e-18312150168NAC domain-containing protein 19
3swm_D6e-18312150168NAC domain-containing protein 19
3swp_A6e-18312150168NAC domain-containing protein 19
3swp_B6e-18312150168NAC domain-containing protein 19
3swp_C6e-18312150168NAC domain-containing protein 19
3swp_D6e-18312150168NAC domain-containing protein 19
4dul_A5e-18312147165NAC domain-containing protein 19
4dul_B5e-18312147165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1146s0008.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293120.0AK229312.1 Arabidopsis thaliana mRNA for putative NAM-like protein, complete cds, clone: RAFL16-57-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192064.10.0NAC domain containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A178V0810.0A0A178V081_ARATH; NTM2
STRINGAT4G01550.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]