PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11259s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 210aa MW: 23627.2 Da PI: 9.9914 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 94.8 | 8.9e-30 | 1 | 74 | 19 | 97 |
DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +idfka+tgksp++d++ fyef+kksisf+vsk+q+++Kir+L+kK+ +k+ k epsf k+hd+k+felsk iWg Araha.11259s0001.1.p 1 MIDFKADTGKSPYEDTNVFYEFLKKSISFEVSKNQFMDKIRSLRKKYIGKEGK-----EPSFVKAHDKKAFELSKFIWG 74 9***********************************************99888.....********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-21 | 1 | 74 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MIDFKADTGK SPYEDTNVFY EFLKKSISFE VSKNQFMDKI RSLRKKYIGK EGKEPSFVKA 60 HDKKAFELSK FIWGPKGIAL DSNVKSNGLS KKSAKKKKID SVKQELVFVG GGSSTNGKKV 120 EDGGGDDKEV LVHGGDWFDN SSLVRMIAGL GVDEYYVKQQ WSLVPVETKK IIEEKFKLLQ 180 AKELEFVLEK TKFLQEVTSM IVEASKKNH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11259s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087822 | 0.0 | AY087822.1 Arabidopsis thaliana clone 38650 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890091.1 | 1e-135 | probable transcription factor At1g61730 | ||||
Swissprot | Q9SYA9 | 1e-115 | STKLD_ARATH; Probable transcription factor At1g61730 | ||||
TrEMBL | A0A178WJA1 | 1e-113 | A0A178WJA1_ARATH; Uncharacterized protein | ||||
STRING | AT1G61730.1 | 1e-113 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-100 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Araha.11259s0001.1.p |