PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1089s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 845aa MW: 94248.9 Da PI: 5.3178 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.9e-29 | 556 | 606 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Araha.1089s0003.1.p 556 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 606 689**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.154 | 540 | 626 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.3E-25 | 558 | 606 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.1E-22 | 735 | 832 | No hit | No description |
SMART | SM00666 | 4.9E-26 | 744 | 827 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 29.403 | 744 | 827 | IPR000270 | PB1 domain |
Pfam | PF00564 | 8.2E-20 | 745 | 826 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.16E-42 | 745 | 825 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 7.2E-21 | 745 | 824 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MEDSFLQSEN AVMDADFMDG LLLDGCWLET TDGSEFLNLA PSTSSVSPFD PSSFMWSPTQ 60 DTSALCTSGV VSQMYGQDSV ERSSLDEFQW NKRWWIGPGG GGSSVTERLV QAVEHIKDYT 120 TERGSLIQLW VPVNRGGKRV LTTKEQPFSH DPLCQRLANY REISVKYQFS AEQDDSKALA 180 GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCGVRGT LAIPVFEQGS NICLGVIEVV 240 MTTEMVKLRP ELESICRALQ AVDLRSTEFP IPPTLKGCDL SYKAALPEIR NLLRCACETH 300 KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ 360 GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANIYGLHGA VAIRLRCIYT GSADFVLEFF 420 LPKDCDDLEE QRKMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL 480 HGNSPWNASL EEIQRSNNTS NPQNLGLVFD GGDKPHDGFG LKRGFDYTMD SNVNESSTFS 540 SGGFSMMAEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS 600 RKIKKVGHSL QKIQRVIDSV QGVSGPLPIG SFYANFPNLV SQSQETSQQA KTSPPPPPPV 660 QLAKSPVSSY SHSSNSSQCC SSETQLNSGA TTDPPSTDVV GALKKTSSEI ELQSSSLDET 720 ILTLSSLENI PQGTNLLSSQ DDDFLRIKVS YGEEKIRLRM RNSRRLTDLL WEIGKRFSIE 780 DMSRYDLKYL DEDNEWVLLT CDEDVEECVD VCRTTPSHTI KLLLQVSSHH FPERSSATEY 840 SLWH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1089s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY091015 | 0.0 | AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds. | |||
GenBank | AY117237 | 0.0 | AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319052.1 | 0.0 | Plant regulator RWP-RK family protein | ||||
Refseq | NP_173488.1 | 0.0 | Plant regulator RWP-RK family protein | ||||
Refseq | NP_973874.1 | 0.0 | Plant regulator RWP-RK family protein | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A178W7P6 | 0.0 | A0A178W7P6_ARATH; Uncharacterized protein | ||||
STRING | AT1G20640.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1089s0003.1.p |