PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.10872s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WRKY

Protein Properties

Length: 401aa MW: 44922.8 Da PI: 6.6807

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.10872s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.5e-34	221	279	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H+h+ Araha.10872s0002.1.p 221 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHP 279 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-34	206	281	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-30	214	281	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	216	281	IPR003657	WRKY domain
SMART	SM00774	5.5E-41	221	280	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	222	279	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MENKKEEDHH HHHHHHQQQQ QQKEIKNTET KIEQEQEQKQ EISQASSSSN MANLVTSSDH 60 HQLELAGNLS SIFDTSSLPF PYSYFEDHSS NNPNSFLDLL RQDHHQFASS SNSSSFSFDA 120 FPLPNNNNNF FTDLPLPQAE SSEVVNTTPT SPNSTSVSSS SNEAANDNNS GKEVTVKDQE 180 EGDQQQEQKG TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY 240 PRSYYRCTTV GCGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDHGA 300 TTASSSSFSI PQPRYLLTQH HQPYNMYNNN SLSMINRSSS DGTFVNPGPS SSFPGFGYDM 360 SQASTSTSSS IRDHGLLQDI LPSQIRSDTI NTQTNEENKK *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MENKKEEDHH HHHHHHQQQQ QQKEIKNTET KIEQEQEQKQ EISQASSSSN MANLVTSSDH  60
HQLELAGNLS SIFDTSSLPF PYSYFEDHSS NNPNSFLDLL RQDHHQFASS SNSSSFSFDA  120
FPLPNNNNNF FTDLPLPQAE SSEVVNTTPT SPNSTSVSSS SNEAANDNNS GKEVTVKDQE  180
EGDQQQEQKG TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY  240
PRSYYRCTTV GCGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDHGA  300
TTASSSSFSI PQPRYLLTQH HQPYNMYNNN SLSMINRSSS DGTFVNPGPS SSFPGFGYDM  360
SQASTSTSSS IRDHGLLQDI LPSQIRSDTI NTQTNEENKK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	214	281	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	214	281	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.10872s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF442397	0.0	AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBank	AY063870	0.0	AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBank	AY091224	0.0	AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002863991.1	0.0	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	0.0	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	D7MNT3	0.0	D7MNT3_ARALL; Uncharacterized protein
STRING	scaffold_801332.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-179	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	Araha.10872s0002.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]