PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1084s0029.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C3H

Protein Properties

Length: 444aa MW: 48663.6 Da PI: 9.7238

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1084s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	397	419	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f r C+ G++C + H+ Araha.1084s0029.1.p 397 KPCMYFNRAKGCRLGESCLYLHD 419 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.779	394	421	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	397	421	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	397	419	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.32E-5	397	422	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MMKKTKKARV SWASDSMLCQ VKLFLTDDCP AKVASNLPPG FEATEYATRR ILSHIPRIKW 60 KRPPKFVLND ALLVGRGGES TETRTENLRI SKVLEAFYPH RSVIPTRPSV SPTVEEAHYD 120 DGKTPNIRLT PVEDEREAAV ESSHSFEAPA AVSGLGPELS LLASSALSAL TKEQGCQVDA 180 DLLVKLLSDP KIVESLINDM KGKPLETANN SPQHVTSTAM DRNPPPMPGN GVPLNVPVSG 240 QSSATDPPLP KPTQPMSSAL SMNLNLQKPT LVVHSYPLSS GIKPLPIFED SYAAAAPLKP 300 SPVDDVVVSE QKTQSLNMSS TWNMNRVPES ARTETDAQIR NGNTNQDGQV SAKLVKNLDY 360 FKSLIREHGA VKPATNETNN YKGRVDDKKV VKVKIQKPCM YFNRAKGCRL GESCLYLHDR 420 SKRLWTDVAP PHFPRAKRLK FGS*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MMKKTKKARV SWASDSMLCQ VKLFLTDDCP AKVASNLPPG FEATEYATRR ILSHIPRIKW  60
KRPPKFVLND ALLVGRGGES TETRTENLRI SKVLEAFYPH RSVIPTRPSV SPTVEEAHYD  120
DGKTPNIRLT PVEDEREAAV ESSHSFEAPA AVSGLGPELS LLASSALSAL TKEQGCQVDA  180
DLLVKLLSDP KIVESLINDM KGKPLETANN SPQHVTSTAM DRNPPPMPGN GVPLNVPVSG  240
QSSATDPPLP KPTQPMSSAL SMNLNLQKPT LVVHSYPLSS GIKPLPIFED SYAAAAPLKP  300
SPVDDVVVSE QKTQSLNMSS TWNMNRVPES ARTETDAQIR NGNTNQDGQV SAKLVKNLDY  360
FKSLIREHGA VKPATNETNN YKGRVDDKKV VKVKIQKPCM YFNRAKGCRL GESCLYLHDR  420
SKRLWTDVAP PHFPRAKRLK FGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1084s0029.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117637	0.0	AK117637.1 Arabidopsis thaliana At5g66270 mRNA for unknown protein, complete cds, clone: RAFL17-29-H06.
GenBank	BT005171	0.0	BT005171.1 Arabidopsis thaliana clone U50458 unknown protein (At5g66270) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887391.1	0.0	zinc finger CCCH domain-containing protein 68
Swissprot	Q9FH61	0.0	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	D7MMZ4	0.0	D7MMZ4_ARALL; Zinc finger (CCCH-type) family protein
STRING	fgenesh2_kg.8__2795__AT5G66270.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Link Out ? help Back to Top
Phytozome	Araha.1084s0029.1.p