PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.10628s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 35850.6 Da PI: 7.5343 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.6e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l +++ G g+W++ ++ g++R++k+c++rw +yl Araha.10628s0004.1.p 15 KGPWLQEEDDKLTAYINDNGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ +v+++++lG++ W++Ia +++ gRt++++k++w++++ Araha.10628s0004.1.p 68 RGNFSDEEESTIVRLHALLGNK-WSKIACHLP-GRTDNEIKNYWNTHM 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.128 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.92E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.186 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRSPCCDQD KGVKKGPWLQ EEDDKLTAYI NDNGYGNWRS LPKLAGLNRC GKSCRLRWMN 60 YLRPDIRRGN FSDEEESTIV RLHALLGNKW SKIACHLPGR TDNEIKNYWN THMRKKLLQM 120 GIDPMTHEPR TNDLSPILDV SQMLAAAINN GQFGNNNLFN NNTALEDLLK LQLIHKMLQI 180 ITPKAIPNIN SFNASSVNPK PEPVVNSFNT NSVNPKPNPP VGLFINQSGI TPDATSDFIP 240 SYENVWDGFE DNQLPGLVTV SQDSLNTAKP GTSTTTEVND HTRTGMMPGY YGDQLLEIPS 300 SVEMAYSLSI HIRMKYRSM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 15 | 117 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-26 | 15 | 117 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00438 | DAP | Transfer from AT4G17785 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.10628s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF175989 | 0.0 | AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds. | |||
GenBank | AK118728 | 0.0 | AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19. | |||
GenBank | BT005642 | 0.0 | BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872424.1 | 0.0 | transcription factor MYB39 | ||||
Swissprot | Q8GWP0 | 0.0 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | D7MDE6 | 0.0 | D7MDE6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__2528__AT4G17785.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12243 | 17 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17785.1 | 0.0 | myb domain protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.10628s0004.1.p |