PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10595s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-X1
Protein Properties Length: 1111aa    MW: 121756 Da    PI: 8.1357
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10595s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.82e-07329347119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C++ CH GpC+pC+
  Araha.10595s0005.1.p 329 CGRHRCERACHVGPCDPCQ 347
                           ******************6 PP
2zf-NF-X117.49.7e-06550568119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C+ lCH+G CppC 
  Araha.10595s0005.1.p 550 CGQHSCETLCHTGHCPPCL 568
                           ******************6 PP
3zf-NF-X117.11.2e-05660675116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG+H C + CH++pC+
  Araha.10595s0005.1.p 660 CGMHACARACHPKPCD 675
                           ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.71E-6151222No hitNo description
PROSITE profilePS500168.849159220IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590162217IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.716162218IPR001841Zinc finger, RING-type
CDDcd060081.34E-5251312No hitNo description
SMARTSM004380.023274292IPR000967Zinc finger, NF-X1-type
PfamPF014228.3276291IPR000967Zinc finger, NF-X1-type
CDDcd060082.59E-11319367No hitNo description
SMARTSM004381.5E-4329348IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-6329346IPR000967Zinc finger, NF-X1-type
CDDcd060089.08E-7383428No hitNo description
SMARTSM004380.0039393412IPR000967Zinc finger, NF-X1-type
PfamPF014223.5E-4393410IPR000967Zinc finger, NF-X1-type
CDDcd060086.75E-13441489No hitNo description
SMARTSM004380.0091451470IPR000967Zinc finger, NF-X1-type
PfamPF014220.002451468IPR000967Zinc finger, NF-X1-type
SMARTSM0043897509546IPR000967Zinc finger, NF-X1-type
PfamPF0142220509520IPR000967Zinc finger, NF-X1-type
CDDcd060086.20E-8543592No hitNo description
SMARTSM004380.0038550569IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4550567IPR000967Zinc finger, NF-X1-type
CDDcd060088.27E-6597644No hitNo description
SMARTSM004380.13607625IPR000967Zinc finger, NF-X1-type
PfamPF0142224607624IPR000967Zinc finger, NF-X1-type
SMARTSM004380.057660691IPR000967Zinc finger, NF-X1-type
PfamPF014220.05660675IPR000967Zinc finger, NF-X1-type
CDDcd060082.62E-4689738No hitNo description
PfamPF0142213693719IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039700721IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3309.3E-4941991IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MSSQVRRDRR ERQRFTPQTS QQTWVPRVTS STSVVVNETP FPFDTNTNFG SLDAGASARP  60
GLVYQQRQHY ESGPLLNNPH QRSNVPGPPS FNRQRRNNGS RTVPDNRQRG GSRGHLVQTV  120
NKGTGLDKER SGHKENTVLT DPNLPQLLQE IQDKLMKGSI ECMICYDMVR RSANIWSCSS  180
CYSIFHLNCI KKWARAPTSV DLLADKNQGS NWRCPGCQFV QLTSSKDIQY RCFCGKREDP  240
SSDPYLTPHS CGDICGKPLE KEFATAAMAN ENTCPHVCVL QCHPGPCPPC KAFAPPRNCP  300
CGKKMIRTRC SERKSNHTCG QSCDKLLYCG RHRCERACHV GPCDPCQVQV NASCFCKQTA  360
ESVICGDMNV KGEVKAEDGV FSCKLNCRKQ LECGNHYCRD VCHPGSCGDC EFLPSRIKSC  420
YCGKTSLEEE RRSCLDPIPS CSNICSKLLP CGLHNCKEMC HSGGCSPCLV QVSQKCRCGS  480
TSRTVECYKT VLETEKFICA KPCGRKKNCG RHRCNERCCP LLNHPKNDDL SGDFFDLHFC  540
HIPCGKRLRC GQHSCETLCH TGHCPPCLEM IFTDLACACG KTSIPPPLPC GTPVPSCQLP  600
CSVPQPCGHS ATHGCHFGDC MPCSVPMEKK CIGGHVVLRN IPCGLKDIRC NKICGKTRCC  660
GMHACARACH PKPCDNGGNA SVTGLRVTCG QTCGAPRRDC RHTCAALCHP SAPCPDQRCE  720
FPLKIACSCG RITATVPCDV GGSAGGFSGD SIYETSILQK LPAALQPVES NGNRIPLGQR  780
KLTCDEECAK VERKRVLQDA FDITPPSLDA LHFDENTAMT EIISDHYRRD PKWVLAVEER  840
CKFLVLGKAR GSTSSSLKLH IFCTMEKDKR DAVRLIAERW KLAVSNAGWE PKRFAVVYVT  900
QKSKSPTRII GVKGVASAGG PHAPAFDPLV DMDPRLVVCF SDLPREANIS ALVLRFGGEC  960
ELVWLNDKNA LAVFHDPVRA ATAMRRLEHG SVYQGAVVVV QNQGQSPSLS NAWGIPGSSV  1020
QRGNPWNKAV IKESDDSWGT EDSPIGGSIL KSAKDNALIT PLVNRWSVLE SDKTVSVEPL  1080
AQTEETSSSK ATGKEPEETA VVDDWEKVCE *
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10595s0005.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866977.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD7KK970.0D7KK97_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10030980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1