PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10584s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 101aa    MW: 11409.1 Da    PI: 10.0379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10584s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-071154344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT    + + +a + + ++   +W  +a+ +g  ++++++k ++
  Araha.10584s0001.1.p 11 SWTSKQNKMFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 54
                          7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.26458IPR017877Myb-like domain
SMARTSM007173.2E-6860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-41161IPR009057Homeodomain-like
SuperFamilySSF466892.77E-121164IPR009057Homeodomain-like
CDDcd001672.39E-41854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSMSSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KRHYDILVED  60
LMNIEKDLVP LPKYKTVDVG SKSRGINDIN LRLMKNMRIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-29377276RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10584s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190341e-145AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10.
GenBankAY5195241e-145AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds.
GenBankBT0056571e-145BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459622.11e-56PREDICTED: protein RADIALIS-like 5
RefseqXP_010498374.11e-56PREDICTED: protein RADIALIS-like 5
RefseqXP_020870089.11e-56protein RADIALIS-like 5
SwissprotQ8GW755e-57RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN22e-58A0A087HPN2_ARAAL; Uncharacterized protein
STRINGA0A087HPN23e-59(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.13e-58RAD-like 5