PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10539s0007.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 745aa    MW: 82225.8 Da    PI: 6.1182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10539s0007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-085799347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Araha.10539s0007.2.p 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1049104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-552102IPR009057Homeodomain-like
PROSITE profilePS5129313.5253104IPR017884SANT domain
SMARTSM007175.1E-654102IPR001005SANT/Myb domain
CDDcd001671.22E-557100No hitNo description
PfamPF002493.2E-65799IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MLKQFAHYCE MQAELKPEGP NGEGRLSNQN SNPNLLSSAS INVAQFPAKK PTRQWAAWTH  60
QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNPKD  120
TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACQGENLSS  180
ASLGNISSHS RERGLDNRPF KLILSDSQNV KKLGPGRAST KNGESLGVNL GDEKEDTAFG  240
RGGRQRRKQG YRKWEKAAID GVSLVADAAE HLERTSIDKD MDDQTELGPS RYLTGKSPLS  300
LCSSGDVLLS DTNMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN RKKISSVLEH  360
LNRKWGSASC ATGELLLFPY NARKETVTCH QRWTHDSFLS AAEVHSMVGS PSVFRLRYGW  420
FVHDASGSII SQFPTSDPCP SLEDDMNVDG VNEVNMLLTE SGPLSVHSTA EQATSVEPSQ  480
GLVCASGEIH DHPAESRDDY EPASTTITPL EHLSSGNAQS AGEWADSLTN ISIGDLLSEV  540
PDDIDSDGVD PPATEGSHYL LRDVPFASDS FDAAIAAHIL RHQNKPSALL PLTSGSSSLW  600
DDEETRDAFS FQKNRLADST EVASVASPKG VGRVNGEPSQ LVEALSGDEG SCNPSDHGDP  660
MEEGPTDPHR MDSPGKTPCG LVDVYWPDSL GPLDLDIRSS KYTEDLILSE SLGGLSRLIA  720
TSLDAFQNCS LFGFDNKKDK SNMV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10539s0007.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879635.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGscaffold_402323.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1