PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.10539s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 181aa MW: 19615 Da PI: 8.0943 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.6 | 1.1e-30 | 34 | 123 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 ag+ r++++hTkv gR RRv ++a+ aar+ +L++eLG+++ ++tieWLl qa+p+i+++tg ++s Araha.10539s0002.1.p 34 AGGGARTKDRHTKVKGRSRRVTMPALAAARISQLTRELGHKTEGETIEWLLSQAEPSIIAATGYgtklisnwvdvaA---------VDS 113 56778***********************************************************5544444333321.........222 PP TCP 79 sssasnsssg 88 sss ++++++ Araha.10539s0002.1.p 114 SSSPQTQTQT 123 2222222211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-24 | 39 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.673 | 40 | 94 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MIFQIACRNE SNFNAIASES RSQTQIAVSK SSSAGGGART KDRHTKVKGR SRRVTMPALA 60 AARISQLTRE LGHKTEGETI EWLLSQAEPS IIAATGYGTK LISNWVDVAA VDSSSSPQTQ 120 TQTPQSPSCR LDLCQPIGIQ YPVNGYSHMP FTAMLLEPMT TAAESEVEIA AEEERTRRHH 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.10539s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006922 | 0.0 | AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence. | |||
GenBank | BT010700 | 0.0 | BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | BT011504 | 0.0 | BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883892.1 | 5e-94 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 5e-93 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | D7LJA4 | 1e-92 | D7LJA4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1743__AT2G37000.1 | 2e-93 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 5e-78 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.10539s0002.1.p |