PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10424s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 266aa    MW: 28949 Da    PI: 10.6038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10424s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.31.9e-10247266322
                           -SS-EEEEEEE--TT-SS-E CS
                  WRKY   3 DgynWrKYGqKevkgsefpr 22 
                           D+y+WrKYGqK++kgs++pr
  Araha.10424s0001.1.p 247 DEYSWRKYGQKPIKGSPHPR 266
                           9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-18194243IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.5E-10233266IPR003657WRKY domain
PROSITE profilePS5081112.668240266IPR003657WRKY domain
SuperFamilySSF1182901.44E-7243266IPR003657WRKY domain
PfamPF031061.9E-6247266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTVDIMRLPK MEDQTAIQEA ASQGLKSMEH LIHVLSNRPE ERHVDCSEIT DFTVSKFKKV  60
ISLLNRTGHA RFRRGPVHSP PPSSSSSIPP PVKVTPPAPT QISAPAPVSF VQSNQQSVTL  120
DFTRPSVFGA KTKSSEVVEF AKETFSVSSN SSFMSSAITG DGSVSKGSSI FLAPAPAVPL  180
NSSGKPPLSG LPYRKRCFEH DHSEDFSGKI SGSGNGKCHC KKSRKNRMKR TVRVPAISAK  240
IADIPPDEYS WRKYGQKPIK GSPHPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00278DAPTransfer from AT2G24570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10424s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935620.0AB493562.1 Arabidopsis thaliana At2g24570 mRNA for hypothetical protein, partial cds, clone: RAAt2g24570.
GenBankAF4258360.0AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
GenBankAK2276040.0AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13.
GenBankBT0064240.0BT006424.1 Arabidopsis thaliana At2g24570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885201.10.0probable WRKY transcription factor 17
SwissprotQ9SJA81e-160WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBLD7LI970.0D7LI97_ARALL; WRKY DNA-binding protein 17
STRINGfgenesh2_kg.4__373__AT2G24570.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.11e-158WRKY DNA-binding protein 17
Publications ? help Back to Top
  1. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  2. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]