PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10374s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 266aa    MW: 30232.4 Da    PI: 8.7659
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10374s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.7e-192874550
                          SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
                SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                          ++ ++++ +s R ++++KKA+ELS+LCd+ev+vi+++ +g+l ++++
  Araha.10374s0003.1.p 28 STAKKTTNLSMREETMFKKAFELSTLCDIEVCVIYYGRDGELiKTWP 74
                          56788999********************************9856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-11675IPR002100Transcription factor, MADS-box
CDDcd002668.36E-227101No hitNo description
PROSITE profilePS5006610.822676IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-1529110IPR002100Transcription factor, MADS-box
PfamPF003191.1E-123069IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDSSMSTKKK TKLSLRNQTC FKKSSLYSTA KKTTNLSMRE ETMFKKAFEL STLCDIEVCV  60
IYYGRDGELI KTWPEDQSKV RDMAERFTKL NDRERRKKST NLSLLLRKKI LDDDKLSEKV  120
LEMKDSLESG LRVLQDKLLL LQPENQTELG QSRVVSSTTY PLSSPLLIED HHQSLVNGVS  180
KTEQDLSTSS LSQHQSKFSV FLYNHDNGSF YQVPDSVSSF DQSLLGAQGS GLRSNFDLPM  240
VFPPQMQTQA PLVHFDQFAP WKQAP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10374s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412170.0AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF15P110.0AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874407.21e-173agamous-like MADS-box protein AGL53
SwissprotQ7X9H91e-146AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLD7M5F81e-168D7M5F8_ARALL; MADS-box family protein
STRINGscaffold_602835.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.11e-110AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]