PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10317s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 310aa    MW: 35814 Da    PI: 6.255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10317s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172875148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Araha.10317s0002.1.p 28 RGPWTIEEDFELINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                          89********************************************97 PP
2Myb_DNA-binding48.52.1e-1581124146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Araha.10317s0002.1.p  81 RGNITLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                           7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2832375IPR017930Myb domain
SuperFamilySSF466892.12E-3025122IPR009057Homeodomain-like
SMARTSM007176.6E-142777IPR001005SANT/Myb domain
PfamPF002499.0E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-222982IPR009057Homeodomain-like
CDDcd001677.46E-113075No hitNo description
PROSITE profilePS5129422.08176130IPR017930Myb domain
SMARTSM007171.1E-1380128IPR001005SANT/Myb domain
PfamPF002492.7E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2283129IPR009057Homeodomain-like
CDDcd001679.12E-7101124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDDKVRSLKI NKNMEDFANM EEEIDLRRGP WTIEEDFELI NYIATHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLQEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW MPRLVERIQA ASTGSVSTSS CVTNSSDQFV  180
INNKNTNNME HLGFISNPNG NGYITPDNSN VAVSPASDLT DCHISSEVGK IGQDQNLVDP  240
QMSWQNYLDK NSGLLNGDFT KMQDQSYLNW FENVNGMIPN YSDSFWNIGN DEDFWLLQQH  300
QQVLDNGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-252512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10317s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196350.0AY519635.1 Arabidopsis thaliana MYB transcription factor (At5g49620) mRNA, complete cds.
GenBankBT0260760.0BT026076.1 Arabidopsis thaliana At5g49620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865745.10.0transcription factor MYB78
SwissprotQ9FGY30.0MYB78_ARATH; Transcription factor MYB78
TrEMBLD7MPC70.0D7MPC7_ARALL; AtMYB78
STRINGfgenesh2_kg.8__837__AT5G49620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-177myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]