PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10294s0015.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 537aa    MW: 60226 Da    PI: 6.1316
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10294s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-083383751954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Araha.10294s0015.1.p 338 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 375
                           664459******************************88 PP
2BELL127.83.8e-41204275172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  Araha.10294s0015.1.p 204 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 275
                           79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.3E-76139273IPR006563POX domain
PfamPF075261.6E-49145272IPR006563POX domain
PROSITE profilePS5007111.758316379IPR001356Homeobox domain
SMARTSM003891.0E-8319383IPR001356Homeobox domain
CDDcd000868.68E-11319380No hitNo description
SuperFamilySSF466891.58E-16320385IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26322384IPR009057Homeodomain-like
PfamPF059201.0E-17336375IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MENYPETQFL PGNSMIQNAT VSYSEELAGR ERTEANNVSA SQERQALSRF GGVSQMQDIH  60
QDFGSWRDQA SDRSGFQLMS AMAGATGILQ TGQGLSLSLG SQILPGIHQM SHQNMAPRAE  120
HFRGNEYATQ SFPGENQNLD VVRTIPNSKY LKAAQQLLDE VVNVRKALKQ FQAEGDKNNE  180
NPQEPNQNTQ DSSTNPPAEI SQSERQEMQS KLTKLLSMLD EVDRRYKQYY QQMQIVVSSF  240
DVIAGYGAAK PYTALALQTI SRHFRSLRDA ISGQILVIRK CLGEQQDGSD GKRVGIISRL  300
KYVDQHLRQQ RGFMQPQAWR PQRGLPENSV LILRAWLFEH FLHPYPKDSD KIMLARQTGL  360
SRGQVSNWFI NARVRLWKPM VEEIYKEEFT ENDSNSSSEN TPKMSEIGHA AADDEDRAQE  420
LSQDQTKLDH GHGYGEETRG MVVQGSHMDG RRFMAVEPTY HVADMSRLGR GDVSLTLGLQ  480
NSQGHGNVVA MSSEAYNFSG VDIYENAIPG AEMEYVNPGS RQNRINSSQL VHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14325383563Homeobox protein Meis2
3k2a_B1e-14325383563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10294s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867111.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874835.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874836.10.0BEL1-like homeodomain protein 6 isoform X1
RefseqXP_020874838.10.0BEL1-like homeodomain protein 6 isoform X1
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLD7MEC20.0D7MEC2_ARALL; Uncharacterized protein
STRINGscaffold_700666.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]