PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10230s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 78aa    MW: 8979.98 Da    PI: 9.4871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10230s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92.1e-121056347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          +WT+ Ed+++  a +++ ++   +W +Iar +g g++ +++k ++  +
  Araha.10230s0014.1.p 10 SWTAKEDKQFEMALAKYDKEtpdRWQKIARAVG-GKSTEEVKRHYELL 56
                          7******************9*************.***********765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-8558IPR009057Homeodomain-like
PROSITE profilePS5129311.86661IPR017884SANT domain
SMARTSM007171.6E-11759IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-15965IPR009057Homeodomain-like
PfamPF002492.5E-101055IPR001005SANT/Myb domain
CDDcd001679.96E-91157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASSSISNSS WTAKEDKQFE MALAKYDKET PDRWQKIARA VGGKSTEEVK RHYELLLRDV  60
NDIESGRYPQ PRYRNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-27176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10230s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064391e-102AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026851e-102CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4876601e-102DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884127.12e-51protein RADIALIS-like 4
SwissprotQ1G3C42e-41RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLD7LBA94e-50D7LBA9_ARALL; DNA binding protein
STRINGfgenesh2_kg.3__3442__AT2G18328.17e-51(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.13e-43RAD-like 4