PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10201s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 274aa    MW: 31578.7 Da    PI: 9.4854
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10201s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-182067148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd ll+++v+ +G g+W+++++  g++R +k+c++rw +yl
  Araha.10201s0002.1.p 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYL 67
                          79********************************************97 PP

2Myb_DNA-binding52.61.1e-1673117147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Araha.10201s0002.1.p  73 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                           7888******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9381567IPR017930Myb domain
SuperFamilySSF466894.49E-3019114IPR009057Homeodomain-like
SMARTSM007172.1E-161969IPR001005SANT/Myb domain
PfamPF002492.6E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-232174IPR009057Homeodomain-like
CDDcd001674.23E-122267No hitNo description
PROSITE profilePS5129424.75968122IPR017930Myb domain
SMARTSM007173.9E-1572120IPR001005SANT/Myb domain
PfamPF002496.2E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2475121IPR009057Homeodomain-like
CDDcd001678.91E-1177118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSWWGVKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVSKLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ESIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KAKLTTNNAE KIKSRLLKRQ QFKEQREIEL QQEQQLFQFD QLDMKKIISL LEDNNSISSS  180
DGGGDVFYAP HQITHSSKPF GYNPNSLEEQ LQGRFTPVNI PDANTMSEDN AIWDGFWNMD  240
VVDGNGGNMD VVAATATYGP RKPYFHNLVI PFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10201s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.21e-174transcription repressor MYB6
TrEMBLR0GP771e-172R0GP77_9BRAS; Uncharacterized protein
STRINGXP_006285781.11e-173(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-142myb domain protein 79