PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.10201s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 274aa MW: 31578.7 Da PI: 9.4854 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++++ g++R +k+c++rw +yl Araha.10201s0002.1.p 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Araha.10201s0002.1.p 73 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.938 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 19 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-16 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-17 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.23E-12 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 24.759 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.91E-11 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MSWWGVKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVSKLA GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ESIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 120 KAKLTTNNAE KIKSRLLKRQ QFKEQREIEL QQEQQLFQFD QLDMKKIISL LEDNNSISSS 180 DGGGDVFYAP HQITHSSKPF GYNPNSLEEQ LQGRFTPVNI PDANTMSEDN AIWDGFWNMD 240 VVDGNGGNMD VVAATATYGP RKPYFHNLVI PFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.10201s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133705 | 0.0 | AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285781.2 | 1e-174 | transcription repressor MYB6 | ||||
TrEMBL | R0GP77 | 1e-172 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | XP_006285781.1 | 1e-173 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-142 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Araha.10201s0002.1.p |