PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10017s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 379aa    MW: 41068.9 Da    PI: 5.2691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10017s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09213260455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Araha.10017s0012.1.p 213 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 260
                           8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15207278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-9207264No hitNo description
PROSITE profilePS5088814.684209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15209277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6213260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDLTGGFGAR SGGVGPCREA IGLESLHLGD EFRQLVTTLP PENASGSFTA LLELPPTQAV  60
ELLHFTDSSS SQAAVTGIGG EIAPPLHSLG GTLAFPSNSV LMERAARFSV IATEQQNGNI  120
SGETPTSSVP SNSSANLDIV KTEPAETDSS QRLISDSAIE NQIPCPSQNN RNGKRKDFEK  180
KGKSSTKKNK SSEENEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCD  240
KIQGTALVLD EIINHVQSLQ RQVEMLSMRL AAVNPRIDFN LDTILASENG SLMDGSFNGT  300
PMQLAWPHQA IETEQSFHHR QLPPPPTQQW PFDGLNQPVW GREEDQADGN DNSNLMAVSE  360
NVMVASANLH PNQVKMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10017s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397730.0AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030370.0BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850745.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y30.0A0A178V8Y3_ARATH; Uncharacterized protein
STRINGAT3G57800.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]