PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.0887s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26350.8 Da PI: 6.0326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.3 | 4.9e-17 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP + +skKls e++ k +YI +Lq Araha.0887s0006.1.p 73 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPETVSKSLKYIPELQ 125 6789*************************66...*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-16 | 73 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-15 | 73 | 129 | No hit | No description |
Pfam | PF00010 | 2.9E-14 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 73 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-13 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MCALVPPLFP NFGWPSTGQC ESFYGAGDNL NNGTFLDFPV PPTYGALTHH QNSLEVSVSS 60 EGNEIANNPV VAKKLNHNAS ERDRRKKINS LFSSLRSCLP ASDQSKKLSI PETVSKSLKY 120 IPELQQQVKK LIQKKEELLV RVSGHRDFEI YDKQQPKAVV SYLSTVSATR LGDNEVMVQI 180 SSSKIHNLSI SNLLGGIEED GVILVDNMDD YYKINCEELS ERMLYLYEKC ENSFN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.0887s0006.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF488576 | 0.0 | AF488576.1 Arabidopsis thaliana clone bHLH038 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AK221542 | 0.0 | AK221542.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-73-C01. | |||
GenBank | BT026419 | 0.0 | BT026419.1 Arabidopsis thaliana At3g56970 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020881758.1 | 1e-163 | transcription factor ORG2 | ||||
Swissprot | Q9M1K1 | 1e-146 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | D7LVM0 | 1e-161 | D7LVM0_ARALL; OBP3-responsive gene 3 (Fragment) | ||||
STRING | fgenesh2_kg.5__2132__AT3G56970.1 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-134 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.0887s0006.1.p |