PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0846s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 376aa    MW: 42398.6 Da    PI: 6.7869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0846s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-211053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en++ rq tf+kR+ngilKKA+ELS+LCd+++ +++fs+tgk
  Araha.0846s0002.1.p 10 KLENTTGRQSTFAKRKNGILKKANELSILCDIDIVLLMFSPTGK 53
                         679***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.642153IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-31160IPR002100Transcription factor, MADS-box
CDDcd002662.98E-26281No hitNo description
SuperFamilySSF554552.88E-26293IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRVKLKIKK LENTTGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT  60
RSMEEVIAKF SQVSPQERTK RKFESLENLK KTFQKLDHDV NIREFIASSN STIEDLSNQA  120
RILQARISEI HGRLSYWTEP DKINNVEHLG QLEISIRQSL DQLRAHKEHF GQQQHAMQIE  180
NANFVKDWST CSMQDGIQIP LEQQLQSMSW ILNSNTTNIV TEEHNSIPQR EVECSASSSF  240
GSYPGYFGTG KSPEITISGQ ETSFLDELNT GQLKPQTSSQ QQFTNNNITA YNPNLQNDLN  300
NHQTLPPPIP PPQVYIPMTQ REYHMNGFFE GPPPGISAYN NNTNQTRFGG SSSNSLPCSI  360
SMFDEYLFSQ MQQPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-13191190MEF2 CHIMERA
6byy_B7e-13191190MEF2 CHIMERA
6byy_C7e-13191190MEF2 CHIMERA
6byy_D7e-13191190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0846s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880222.10.0agamous-like MADS-box protein AGL30 isoform X3
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLD7LQC80.0D7LQC8_ARALL; Predicted protein
STRINGAl_scaffold_0005_2280.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.20.0AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]