PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0783s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 587aa    MW: 64507.3 Da    PI: 6.4265
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0783s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15211270155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Araha.0783s0007.1.p 211 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 270
                          57*******************999975578446*************************98 PP
2AP251.13.3e-16313364155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Araha.0783s0007.1.p 313 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 364
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-12211270IPR001471AP2/ERF domain
CDDcd000181.68E-21211280No hitNo description
SuperFamilySSF541712.75E-17211280IPR016177DNA-binding domain
SMARTSM003802.1E-29212284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15212279IPR001471AP2/ERF domain
PROSITE profilePS5103219.164212278IPR001471AP2/ERF domain
PRINTSPR003672.7E-6213224IPR001471AP2/ERF domain
PfamPF008474.1E-11313364IPR001471AP2/ERF domain
CDDcd000182.92E-24313374No hitNo description
SuperFamilySSF541711.44E-17313374IPR016177DNA-binding domain
SMARTSM003805.0E-33314378IPR001471AP2/ERF domain
PROSITE profilePS5103218.742314372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17314373IPR001471AP2/ERF domain
PRINTSPR003672.7E-6354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH HTDVDSTTTT AVDVAGEYCF DLAAASDESS AVQTSFSSPF  60
GVALEAFTRD NNSHSRDWDI NSGACSNIHN NEQNGPKLEN FLGRNTTIYN TNKNVGDGSG  120
SCEGPGGRDG GGGSLGLSMI KTWLNNHPVA NVNYQDSGNS ARGLSLSMNS STTCDSNNYN  180
NNNDVVQEKT IVDVLEATPK KTIESFGQRT SIYRGVTRHR WTGRYEAHLW DNSCKREGQT  240
RKGRQVYLGG YDKEEKAARA YDLAALKYWG TTTTTNFPMS EYEKEVEEMK HMTRQEYVAS  300
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFGTQEE AAEAYDIAAI  360
KFRGLSAVTN FDMSRYNVKA ILESPSLPIG SSAKRLKDVN NPVPSTMISN NVSESANNAS  420
GWQNAAFQHH QGLDLSLLQQ QQERYVGYYN GGNLSTESTR VCFKQEDEQQ HFLSNSPSLM  480
ANVDHHSSTS DDSVTVCGNV VSYGGYQGFA IPVGTSVNCD VFTAAEIAYN ARNRYYYAQQ  540
QQQQQIQHSP GGDFPVAISS NVSSNMYFHG EGGGEGAPTF SVWNDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125132GGRDGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0783s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6878430.0EF687843.1 Arabidopsis thaliana ecotype C24 BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGAl_scaffold_0006_16500.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]