PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0769s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 39066.2 Da PI: 5.0701 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.4 | 8.7e-41 | 82 | 225 | 2 | 125 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..........eaesssss 81 +kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++ ++ ++++ e+e++++ Araha.0769s0003.1.p 82 VVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNLNNEDEdfgnnggdvaEEEEEEE- 170 589*************************************************************4444422222322222111111111. PP TCP 82 asnsssg................kaaksaakskksqksaasalnlak.esrakarararer 125 + ++ + k+ +++k++++++n++ srakar +a+e Araha.0769s0003.1.p 171 ------EdgdksfvygsspdscgEKVVCEVKKAEKRKKKSEVSNMSSeGSRAKARGKAKEM 225 ......1233455677888788777777888888888888888888878999999999884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-39 | 84 | 226 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.371 | 84 | 142 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSSSNNDGNN NGVYPLSLYL SSLSGHQDII HNPYNHQLKA SPGHMVSAVP ESLIDYMAFN 60 SNNVVNHQGF EFPEVSKETK KVVKKDRHSK IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG 120 FDKASKTLDW LLKKSRKAIK EVVQAKNLNN EDEDFGNNGG DVAEEEEEEE EDGDKSFVYG 180 SSPDSCGEKV VCEVKKAEKR KKKSEVSNMS SEGSRAKARG KAKEMAYDHP ETISDITQSE 240 IMDPFNRSII FNEGQGMTHF FYNEAIEEFD NQESILTTRR FNLPANMGQS YNQRNGTFML 300 IDQGSTSNYN AIDLPQILDY NYDQNPFVDQ SFCAVTDTNF PRGTFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-14 | 89 | 142 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-14 | 89 | 142 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0769s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002130 | 0.0 | AC002130.2 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888583.1 | 0.0 | transcription factor TCP1 | ||||
Swissprot | Q9FYG7 | 0.0 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | D7KV11 | 0.0 | D7KV11_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_2001059 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-147 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0769s0003.1.p |
Publications ? help Back to Top | |||
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