PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0746s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CPP
Protein Properties Length: 472aa    MW: 52533.7 Da    PI: 8.5203
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0746s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.6e-1499137241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++++CnCk+skClk+YCeCfa+g++C+  C+C +C+Nk e
  Araha.0746s0004.1.p  99 QQRHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNKLE 137
                          789*************************.********987 PP
2TCR512.8e-16183222140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC++a+  Cs++CkC+dCkN e
  Araha.0746s0004.1.p 183 KHSKGCHCKKSGCLKKYCECYQANILCSDNCKCQDCKNFE 222
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.4E-1698138IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.73399223IPR005172CRC domain
PfamPF036384.3E-11101135IPR005172CRC domain
SMARTSM011141.7E-19183224IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.2E-13186221IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEDLSSNQNL PPRQSDFSIP AAKMDSFQKS LEPPPSSPAK SSQESATEVT PPQKPPLHRF  60
GQNQVQKNQS EMCRVSNQDP LDSGRHIEVE SKENTPNKQQ RHCNCKNSKC LKLYCECFAS  120
GSYCNGCNCL NCHNKLENES SRQVAITAIL ERNPDAFKPK IAGSPHGMKD LQENVRQILL  180
VGKHSKGCHC KKSGCLKKYC ECYQANILCS DNCKCQDCKN FEGSEERNSL LHRSHVSETY  240
IQQLTNAAVN RAIDMSAYLN PPESRKRKSN DTSHSVEARG SSAVSSHVFQ NHRVNSMTRN  300
GDTSLFSLPN KKAESGSRTS AYRSSLSNTI QPHHVRELCS LLVSKSVNVA KKLSDKGRKN  360
DKDPSLDRAR INANKINDSP DCVLDANRID EKPLSPATRA LMCDEEHEIG SEKETSARVK  420
TRQEKEGTDT SSVIYLEQER QILSSFRDYL IQLSNRASVN GTNIKTNTNP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-3410323214132Protein lin-54 homolog
5fd3_B6e-3410323214132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0746s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-118AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-118CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877857.10.0protein tesmin/TSO1-like CXC 7 isoform X2
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A178UQ150.0A0A178UQ15_ARATH; Tesmin/TSO1-like CXC domain-containing protein
TrEMBLA0A384KB690.0A0A384KB69_ARATH; Uncharacterized protein
STRINGBostr.29827s0240.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein