PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0689s0002.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 915aa MW: 100959 Da PI: 5.2473

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0689s0002.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	554	604	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Araha.0689s0002.2.p 554 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 604 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.336	538	624	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-27	556	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	801	898	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-23	809	892	No hit	No description
PROSITE profile	PS51745	21.372	812	895	IPR000270	PB1 domain
SMART	SM00666	3.1E-23	812	895	IPR000270	PB1 domain
Pfam	PF00564	2.6E-17	813	894	IPR000270	PB1 domain
CDD	cd06407	2.95E-34	813	894	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MENPSSSRDK GFCFPDIPVE EMDGWVKNLI SEEDMFSSSS TSELMNFESF ASWCNSPSAT 60 DILFTQYGLS TCTPFGGLEG SYAGEKRPVQ EMSSQFYCLS DTEKTSGKRR KGNNQTSSVP 120 RSLSHSLDEK MLKALSLFME FSGEGILAQF WTPIKTGDQY MLSTCDQAYL LDSRLSGYRE 180 VSRRFTFSAE ANQSSYPGLP GRVFISGVPE WTSNVMYYKT AEYLRMKHAL DNEVRGSIAI 240 PVLEASGSSC CTVLELVTCR EKPNFDVEMD SVCRALQAVN LQTSTIPRCQ YLSSNQKEAL 300 AEIRDVLRAV CHAHRLPLAL AWIPCSYSKG ANGELVKICG KNSKECSLLC IEETACYVND 360 MEMEGFVNAC LELYLREGQG IVGKALISNK PSFSSDVKTF DICEYPLVQH ARKFGLNAAV 420 ATKLRSTFTG DSDYILEFFL PVSMKGSSEQ QLLLDSLSGT MQRICRTLRT VSDAESAEGT 480 EFGFFSGEMK NLPQTTVSDG SFQTTFPDTN VNSTRSNFSN MSSDKRNKMA GSQGTLQQEI 540 SGARRSEKKK SSTEKNVSLN VLQQYFSGSL KDAAKSLGVC PTTLKRICRQ HGIMRWPSRK 600 INKVNRSLRK IQTVLDSVQG VEGGLKFDSV TGEFVAVGPF IQEFDTQKSL SSHDEDALAR 660 SQGDMDEDVS LEPLKVTSHD GGGVKLEEGV ETIHQAEPGS LKEPWTWISK QSGLIYSDDI 720 DIGKRSEEVK KDKDLCVRRC LSSVALAGDD MNTGIERGNG TVEPNQSISS SMSDSSNSSG 780 AVLLVSSSTS MEQNWNQIRT HNNSGESGSS STLTVKATYR EDTVRFKLDP YLVGCSQLYK 840 EVAKRFKLQE SAFQLKYLDD EEEWVMLVTD SDLHECFEIL NSMRKHTVKF LVRDIPGAAM 900 GSSACSNGYL GAGT*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MENPSSSRDK GFCFPDIPVE EMDGWVKNLI SEEDMFSSSS TSELMNFESF ASWCNSPSAT  60
DILFTQYGLS TCTPFGGLEG SYAGEKRPVQ EMSSQFYCLS DTEKTSGKRR KGNNQTSSVP  120
RSLSHSLDEK MLKALSLFME FSGEGILAQF WTPIKTGDQY MLSTCDQAYL LDSRLSGYRE  180
VSRRFTFSAE ANQSSYPGLP GRVFISGVPE WTSNVMYYKT AEYLRMKHAL DNEVRGSIAI  240
PVLEASGSSC CTVLELVTCR EKPNFDVEMD SVCRALQAVN LQTSTIPRCQ YLSSNQKEAL  300
AEIRDVLRAV CHAHRLPLAL AWIPCSYSKG ANGELVKICG KNSKECSLLC IEETACYVND  360
MEMEGFVNAC LELYLREGQG IVGKALISNK PSFSSDVKTF DICEYPLVQH ARKFGLNAAV  420
ATKLRSTFTG DSDYILEFFL PVSMKGSSEQ QLLLDSLSGT MQRICRTLRT VSDAESAEGT  480
EFGFFSGEMK NLPQTTVSDG SFQTTFPDTN VNSTRSNFSN MSSDKRNKMA GSQGTLQQEI  540
SGARRSEKKK SSTEKNVSLN VLQQYFSGSL KDAAKSLGVC PTTLKRICRQ HGIMRWPSRK  600
INKVNRSLRK IQTVLDSVQG VEGGLKFDSV TGEFVAVGPF IQEFDTQKSL SSHDEDALAR  660
SQGDMDEDVS LEPLKVTSHD GGGVKLEEGV ETIHQAEPGS LKEPWTWISK QSGLIYSDDI  720
DIGKRSEEVK KDKDLCVRRC LSSVALAGDD MNTGIERGNG TVEPNQSISS SMSDSSNSSG  780
AVLLVSSSTS MEQNWNQIRT HNNSGESGSS STLTVKATYR EDTVRFKLDP YLVGCSQLYK  840
EVAKRFKLQE SAFQLKYLDD EEEWVMLVTD SDLHECFEIL NSMRKHTVKF LVRDIPGAAM  900
GSSACSNGYL GAGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	543	549	RRSEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0689s0002.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882215.1	0.0	LOW QUALITY PROTEIN: protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	D7LWE8	0.0	D7LWE8_ARALL; Predicted protein
STRING	Al_scaffold_0005_2880	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Araha.0689s0002.2.p