PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0602s0026.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 402aa    MW: 44967.7 Da    PI: 10.1851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0602s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07316365147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r ++T  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  Araha.0602s0026.1.p 316 RRPFTVSEVEALVQAVERLGTGRWRDVKCHAFdhaNHRTYVDLKDKWKTL 365
                          679************************988888888***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.0E-5184242IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.686311370IPR017930Myb domain
SuperFamilySSF466891.27E-15313400IPR009057Homeodomain-like
SMARTSM007171.6E-6315368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10316366IPR009057Homeodomain-like
CDDcd116603.94E-17317367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVACGVDAYQ LPVVPRACRS PRGRRQRLMK KQRSDFEVLA QVQVAEKLSG ERKNRVAIGS  60
LAHKTKETKN DFIVNDFLET MEVEVKPQPG LEKPSQVLLS KDWLALGPAV SSSPISQEEN  120
FDSNSKIDGK RKMCHLKERG SCSSQESQNM YPLKKRKLFY QNHPFESHDA PCTVKFGIKS  180
LKISELLVDI PESATVGSLK LAVLEAVTRV LKDGLNIGVL LRGKTIVDDS KTLLQIGIPH  240
GDDDDQNLSS LGFILEPQKS ETTTITTLTT VYPRTRLRQN RVLGSVDSTE VMAAKSVVPV  300
RMKPASQPEI VQRRIRRPFT VSEVEALVQA VERLGTGRWR DVKCHAFDHA NHRTYVDLKD  360
KWKTLVHTAK ISARQRRGEP VPQDLLDRVL AAHALWSDRT G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-482994011102Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0602s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-104CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876225.10.0telomere repeat-binding protein 6
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLD7LUM40.0D7LUM4_ARALL; Predicted protein
STRINGAl_scaffold_0005_22800.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4