PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0473s0001.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 977aa MW: 108787 Da PI: 6.1002

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0473s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	653	703	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Araha.0473s0001.2.p 653 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 703 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	642	723	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	656	703	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.61E-24	865	961	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.4E-25	873	957	No hit	No description
SMART	SM00666	1.8E-28	875	958	IPR000270	PB1 domain
PROSITE profile	PS51745	29.794	875	958	IPR000270	PB1 domain
Pfam	PF00564	3.3E-18	877	957	IPR000270	PB1 domain
CDD	cd06407	1.59E-41	877	957	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEGGRGGGDG NFLPNSNFGA FSESAMDMDF MDELFFDGCW LETTDGKSFK QTMGQPVSDS 60 TIMNDNNNNN NDSYLYGYQY AENLSQDHIS TEETGRKFPP ITPSFLKIED LSNQPMNQVP 120 FDEAAVMSSA QAEKFLLEES EGGRRYWIAP RTSQGPSSSV KDRLVQAIKG LNEAVQDKDF 180 LIQIWVPIQQ EGKNFLTTLE QPHFFNPKYS SLKRYRDVSV SYNFLADEDS KESVGLPGRV 240 FLGKLPEWTP DVRFFRSEEY PRIKEAEKCD VRGSLALPVF ERGSGTCLGV VEIVTTTQKM 300 NYRPELDNIC KALESVNLRS SRNLNPPSRE FLQVYNEFYY AALPEVSEFL TLVCRLYDLP 360 LALTWAPCAR QGKVGSRHSD ENFAECVSTV DDACIVPDHQ SRHFLEACSE HHLLQGEGIV 420 GKAFKATKLF FVPEVTTFSK TNYPLAHHAK ISGLHAALAV PLKNKFNSSV EFVLEFFFPK 480 ACLDTEAQQE MLKSLSATLQ QDFRSLNLFI DKELELEVVF PVREEVVFAE NPLLNAGTGE 540 NMKPLPLEDI SQEDSSWISH MIKANEKGKG VSLSWEYQKE EPKEEFMLTS GWDNNQIGSG 600 HNNFLSEAEQ FQKVSNSGLR IDMVPSFESA SFGLGQTLLG SRRPGEKRRT KTEKTIGLEV 660 LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GITRWPSRKI KKVGHSLKKL QLVIDSVQGV 720 QGSIQLDSFY TSFPELSSPH MSGTGTSFKN TDQSRNLNVQ TENGVSAQGT AAAPKSPPSS 780 SCSHSSGSST CCSTGANQST NTGNTSNTVT TLMAENASAI LKRARSEVRL HTMNQDETKS 840 LSRTLSHKTF SEHPLFENLP RLPESSSRKL KAGGASKVKA TFGEAKVRFT LLPTWGFREL 900 QHEIARRFNI DNIAPFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ 960 VKLGGSFGSI GLGPSL*

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEGGRGGGDG NFLPNSNFGA FSESAMDMDF MDELFFDGCW LETTDGKSFK QTMGQPVSDS  60
TIMNDNNNNN NDSYLYGYQY AENLSQDHIS TEETGRKFPP ITPSFLKIED LSNQPMNQVP  120
FDEAAVMSSA QAEKFLLEES EGGRRYWIAP RTSQGPSSSV KDRLVQAIKG LNEAVQDKDF  180
LIQIWVPIQQ EGKNFLTTLE QPHFFNPKYS SLKRYRDVSV SYNFLADEDS KESVGLPGRV  240
FLGKLPEWTP DVRFFRSEEY PRIKEAEKCD VRGSLALPVF ERGSGTCLGV VEIVTTTQKM  300
NYRPELDNIC KALESVNLRS SRNLNPPSRE FLQVYNEFYY AALPEVSEFL TLVCRLYDLP  360
LALTWAPCAR QGKVGSRHSD ENFAECVSTV DDACIVPDHQ SRHFLEACSE HHLLQGEGIV  420
GKAFKATKLF FVPEVTTFSK TNYPLAHHAK ISGLHAALAV PLKNKFNSSV EFVLEFFFPK  480
ACLDTEAQQE MLKSLSATLQ QDFRSLNLFI DKELELEVVF PVREEVVFAE NPLLNAGTGE  540
NMKPLPLEDI SQEDSSWISH MIKANEKGKG VSLSWEYQKE EPKEEFMLTS GWDNNQIGSG  600
HNNFLSEAEQ FQKVSNSGLR IDMVPSFESA SFGLGQTLLG SRRPGEKRRT KTEKTIGLEV  660
LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GITRWPSRKI KKVGHSLKKL QLVIDSVQGV  720
QGSIQLDSFY TSFPELSSPH MSGTGTSFKN TDQSRNLNVQ TENGVSAQGT AAAPKSPPSS  780
SCSHSSGSST CCSTGANQST NTGNTSNTVT TLMAENASAI LKRARSEVRL HTMNQDETKS  840
LSRTLSHKTF SEHPLFENLP RLPESSSRKL KAGGASKVKA TFGEAKVRFT LLPTWGFREL  900
QHEIARRFNI DNIAPFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ  960
VKLGGSFGSI GLGPSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0473s0001.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874363.1	0.0	protein NLP2
Refseq	XP_020874364.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	Cagra.2350s0071.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Araha.0473s0001.2.p