PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0439s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 763aa    MW: 85366.4 Da    PI: 5.6614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0439s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.41.7e-1153877571373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+
  Araha.0439s0001.1.p 387 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPF 473
                          5789**************************************************************9999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k + + aN+ +++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+
  Araha.0439s0001.1.p 474 KKAAIIFANHNMMRFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPFEY 563
                          *************************************************************99*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +a+++e++++e+L++++gE ++Vn+ ++  +llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysa+f
  Araha.0439s0001.1.p 564 NA-IAQKWETIKVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVF 652
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+ ++kl+re+e r ++E+e+ grei nvvaceg+er+er et+++W++rl +aGF+++pl+++ +++ kl +++ +++ + v+++ ++l
  Araha.0439s0001.1.p 653 DMCDSKLAREDEMRLMYEKEFYGREIINVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIKNGYDKNFDVDQNGNWL 742
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r +++ S+W
  Araha.0439s0001.1.p 743 LQGWKGRIVYASSVW 757
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.125361738IPR005202Transcription factor GRAS
PfamPF035146.0E-113387757IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGSYPDGFPG SMDEFDFNKD FDLPPSNQTL GLANGFYLDD LDFTSLDPPP EAYPSQNYNN  60
NKAASGDLLS SPSDDADFSD SVLKYISQVL MEEDMEEKPC MFHDALALQA AEKSLYEALG  120
EKYPSSSSSG SVDHPERLAT DSPDGSCSGG AFSDYASTTT TTSSDSHWSV DGLENRPSWL  180
NTPMPSNFVF QSTSRSNSVT GGGGNTAVYG SGFGDDLVSN MFQDSDLALQ FKRGVEEASK  240
FLPKSSQLFI DVDSYIPKNS GSKENGSEVF VKTEKKDETE HHHHHSSAPP PNRLTGKKSH  300
WREEDEDFVE ERSNKQSAVY VEESELSEMF DKILVCGPGK PVCILDQKFP TEPAEVETAQ  360
SNGAKIRGKK STTSNHSNDS KKETADLRTL LVLCAQAVSV DDRRTANEML RQIREHSSPL  420
GNGSERLAHY FANSLEARLA GTGTQIYTAL SSKKTSAADM LKAYQTYMSV CPFKKAAIIF  480
ANHNMMRFTA NANTIHIIDF GISYGFQWPA LIHRLSLRPG GSPKLRITGI ELPQRGFRPA  540
EGVQETGHRL ARYCQRHNVP FEYNAIAQKW ETIKVEDLKL RQGEYVVVNS LFRFRNLLDE  600
TVLVNSPRDA VLKLIRKVNP NVFIPAILSG NYNAPFFVTR FREALFHYSA VFDMCDSKLA  660
REDEMRLMYE KEFYGREIIN VVACEGTERV ERPETYKQWQ ARLIRAGFRQ LPLEKELMQN  720
LKLKIKNGYD KNFDVDQNGN WLLQGWKGRI VYASSVWVPS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5139476125381Protein SCARECROW
5b3h_D5e-5139476125381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0439s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankAK3167930.0AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870887.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLD7KH330.0D7KH33_ARALL; Predicted protein
STRINGAl_scaffold_0001_6970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]