PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0403s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 246aa    MW: 27288.7 Da    PI: 5.0641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0403s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131569148
                         TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +lvd  +  G+        +W+ +++  g++R++k+c++rw +yl
  Araha.0403s0001.1.p 15 KGPWTVEEDGKLVDFLRTRGNCggggggwCWRDVPKLAGLRRCGKSCRLRWTNYL 69
                         79***************************************************97 PP
2Myb_DNA-binding53.84.5e-1775119147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +++eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++
  Araha.0403s0001.1.p  75 RGLFSEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 119
                          7889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17672IPR009057Homeodomain-like
PROSITE profilePS5129410.6241069IPR017930Myb domain
SuperFamilySSF466893.37E-2312116IPR009057Homeodomain-like
SMARTSM007176.4E-51471IPR001005SANT/Myb domain
PfamPF002498.9E-121569IPR001005SANT/Myb domain
CDDcd001674.16E-41769No hitNo description
PROSITE profilePS5129425.74470124IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2573125IPR009057Homeodomain-like
SMARTSM007172.0E-1674122IPR001005SANT/Myb domain
PfamPF002492.2E-1575119IPR001005SANT/Myb domain
CDDcd001679.77E-1278120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGGRKPCCDE VGVRKGPWTV EEDGKLVDFL RTRGNCGGGG GGWCWRDVPK LAGLRRCGKS  60
CRLRWTNYLR PDLKRGLFSE EEIQLVIDLH ARLGNRWSKI AVELPGRTDN DIKNYWNTHI  120
KRKLIRMGID PNTHRRYDQQ KVNEEEKILV NDSKPLPEPE VSVGLKNDTS GVLSGNLNQL  180
ADVDGDDQPW SFLMENDGEG GGGVAGELTM LLSGDLTSSC SSSSSLWLKY GDLGYEDLEL  240
GCFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25151247108B-MYB
1h8a_C2e-251512427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0403s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990260.0AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAY5196440.0AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866484.11e-150protein ODORANT1
SwissprotQ50EX61e-67ODO1_PETHY; Protein ODORANT1
TrEMBLD7MLC81e-149D7MLC8_ARALL; Uncharacterized protein
STRINGscaffold_802887.11e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-142myb domain protein 99
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]