PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0354s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 198aa    MW: 22264 Da    PI: 10.0091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0354s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-163781248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         ++++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +yl
  Araha.0354s0004.1.p 37 NNFSKDEDDLILKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWETYL 81
                         589******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-181890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-41943IPR009057Homeodomain-like
PROSITE profilePS5129423.6923185IPR017930Myb domain
SMARTSM007173.6E-153583IPR001005SANT/Myb domain
PfamPF002491.3E-143781IPR001005SANT/Myb domain
CDDcd001671.95E-123881No hitNo description
Gene3DG3DSA:1.10.10.601.8E-194482IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MNKSRLRALS PPSGMQHRGK RCRLRGRNYI RPEVKQNNFS KDEDDLILKL HALLGNRWSL  60
IAGRLPGRTD NEVRIHWETY LKRKLMKMGI DPTNHRLHHH TNYISRQYLN SSRKEHETEI  120
ISDQSSSVSE SSGISTILPI PSTNCSEDST STGRSHLPDL NIALTPTVTS LPAGSLQDFS  180
ESSNNGSTGQ ETFLLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18198542108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0354s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706090.0AF370609.1 Arabidopsis thaliana putative transcription factor (F23N20.2) mRNA, complete cds.
GenBankAY0482310.0AY048231.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY0870930.0AY087093.1 Arabidopsis thaliana clone 31592 mRNA, complete sequence.
GenBankAY0916970.0AY091697.1 Arabidopsis thaliana At1g71030/F23N20_2 mRNA, complete cds.
GenBankAY5195190.0AY519519.1 Arabidopsis thaliana MYB transcription factor (At1g71030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890812.11e-117myb-related protein 308
TrEMBLD7KYH91e-116D7KYH9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1365__AT1G71030.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.11e-112MYB-like 2