PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0323s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 556aa    MW: 59835.9 Da    PI: 6.45
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0323s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.4e-30233292159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+
  Araha.0323s0001.1.p 233 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHS 292
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31218294IPR003657WRKY domain
SuperFamilySSF1182902.88E-27226294IPR003657WRKY domain
PROSITE profilePS5081128.3228294IPR003657WRKY domain
SMARTSM007742.8E-36233293IPR003657WRKY domain
PfamPF031069.2E-27234291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEVLLKLPTS ESPLKDKVFG SVQVHEASKD DGDHQELESA KAEMSEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIIQQEP SNTATKDQNM VDHPKPTTTD LSSIDQEREL VSLSLGRRSS  120
SPSECIPKKE EKTDAISAEV NADEELTKAG LTLGINNGNG RETDEGLSME NRANSSHGSE  180
EAPGETWPPG KVTGKRSSPA PASGGDADGE AGQQNHVKRA RVCVRARCDT PTMNDGCQWR  240
KYGQKIAKGN PCPRAYYRCT VAPGCPVRKQ VQRCADDMSI LITTYEGTHS HSLPLSATTM  300
ASTTSAAASM LLSGSSSSSA AEMIGNNLYD NSRFNNNNKS FYSPTLHSPL HPTVTLDLTA  360
PQHSSSSSSS LPSLNFNKFS NSFQRFPSTS LNFSSTSSTS SNSSTLNLPA IWGNGYSSYT  420
PYPYNNVQFG TSNLGKTVQN SQSLTETLTK ALTSDPSFHS VIAAAISTMV GSNGEQQIVG  480
PRHSISNNIQ QTTGTNNNKG CGGYFSSLLM SNIMASNQTG VAMDQPSSQL PHFSMFKNSS  540
SSSSTTNFVN NEEKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21220294174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0323s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871650.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLD7M6R70.0D7M6R7_ARALL; WRKY DNA-binding protein 72
STRINGscaffold_601540.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72