PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0214s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 170aa MW: 17815.3 Da PI: 10.3399 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.2e-13 | 135 | 160 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C+++++ G C yGdrC+FaHg+ Araha.0214s0002.2.p 135 YKTKICDRYSK-GNCTYGDRCHFAHGE 160 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00322 | 2.3E-11 | 41 | 111 | IPR004087 | K Homology domain |
SuperFamily | SSF54791 | 2.19E-14 | 41 | 111 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.816 | 42 | 106 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-15 | 43 | 110 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.82E-11 | 44 | 106 | No hit | No description |
Pfam | PF00013 | 1.0E-10 | 45 | 107 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-17 | 129 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-8 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-9 | 134 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.934 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-10 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTNLRPPVAQ VSRNMQGFGG VGGRFSGRGD PGLGPVSIFG ASATSKISVD ASLAGAIIGK 60 GGIHSKQICR QTGAKLSIKD HERDPNLKII ELEGTFEQIN IASGMVRELI GRLGSAKKPQ 120 GISGPEGKPH PGSNYKTKIC DRYSKGNCTY GDRCHFAHGE AELRRSGIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0214s0002.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117974 | 0.0 | AK117974.1 Arabidopsis thaliana At5g06770 mRNA for unknown protein, complete cds, clone: RAFL19-18-C06. | |||
GenBank | AP002032 | 0.0 | AP002032.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15. | |||
GenBank | BT005260 | 0.0 | BT005260.1 Arabidopsis thaliana At5g06770 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873278.1 | 1e-115 | zinc finger CCCH domain-containing protein 52 isoform X1 | ||||
Refseq | XP_020878769.1 | 1e-116 | zinc finger CCCH domain-containing protein 52 isoform X3 | ||||
Swissprot | Q9FG30 | 1e-112 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | D7LZT8 | 1e-114 | D7LZT8_ARALL; KH domain-containing protein | ||||
STRING | fgenesh1_pm.C_scaffold_6000515 | 1e-115 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-101 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0214s0002.2.p |
Publications ? help Back to Top | |||
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