PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0173s0016.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 275aa    MW: 31355.2 Da    PI: 8.1999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0173s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24e-50191423128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeel+ +yL++kve+k+++l e ik++diyk++PwdLp+  + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v
  Araha.0173s0016.1.p  19 PGFRFHPTDEELLGYYLRRKVENKTIKL-ELIKQIDIYKYDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPV 107
                          9***************************.99***************7777799************************************* PP

                  NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +s +   vglkk+Lv+y g+a kg+ktdW+mhe+rl
  Araha.0173s0016.1.p 108 YS-NLDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 142
                          **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.97717166IPR003441NAC domain
SuperFamilySSF1019412.62E-5518165IPR003441NAC domain
PfamPF023651.7E-2519142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSGEGNLGKD HEEDEAPLPG FRFHPTDEEL LGYYLRRKVE NKTIKLELIK QIDIYKYDPW  60
DLPRVSSVGE KEWYFFCMRG RKYRNSVRPN RVTGSGFWKA TGIDKPVYSN LDCVGLKKSL  120
VYYLGSAGKG TKTDWMMHEF RLPTTTKTDS PAQQAEVWTL CRIFKRVTSQ RNPTIVPPNR  180
KPVITLTDSC SKTSSLDSDH TSHRIVDSLS HEPPLPQPQN PYWNQHMVGF NQPTYTCNDN  240
NNLLSFWNGN GGDFIGDSAS WDELRSVIDG NTKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-531917219171NO APICAL MERISTEM PROTEIN
1ut4_B4e-531917219171NO APICAL MERISTEM PROTEIN
1ut7_A4e-531917219171NO APICAL MERISTEM PROTEIN
1ut7_B4e-531917219171NO APICAL MERISTEM PROTEIN
3swm_A5e-531917222174NAC domain-containing protein 19
3swm_B5e-531917222174NAC domain-containing protein 19
3swm_C5e-531917222174NAC domain-containing protein 19
3swm_D5e-531917222174NAC domain-containing protein 19
3swp_A5e-531917222174NAC domain-containing protein 19
3swp_B5e-531917222174NAC domain-containing protein 19
3swp_C5e-531917222174NAC domain-containing protein 19
3swp_D5e-531917222174NAC domain-containing protein 19
4dul_A4e-531917219171NAC domain-containing protein 19
4dul_B4e-531917219171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0173s0016.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935870.0AB493587.1 Arabidopsis thaliana At2g43000 mRNA for hypothetical protein, partial cds, clone: RAAt2g43000.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881884.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK550.0NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLD7LJF20.0D7LJF2_ARALL; ANAC042
STRINGfgenesh2_kg.4__2460__AT2G43000.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.10.0NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]