PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0097s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 428aa    MW: 47634.4 Da    PI: 6.1944
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0097s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.5e-10211267561
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l  
  Araha.0097s0005.1.p 211 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 267
                          9*******************************************9999877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-15207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749209272IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-10211265No hitNo description
PfamPF001701.1E-8211263IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11211262No hitNo description
CDDcd147034.92E-24212261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDKEKSPAPP SGGLPPPSGR YSAFSPNGSS FAMKSESSFP HLTPSGSSSS DANRFSHDIS  60
RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS DLGVVGAADG PSFSDDTDED LLYMYLDMDK  120
FNSSATSTSQ MGEPSEPAWR NELGSTSNLQ STPGSSSERP RIRHQHSQSM DGSTTIKPEM  180
LMSGNEDVSG VDSKKAISAA KLSELALIDP KRAKRIWANR QSAARSKERK MRYIAELERK  240
VQTLQTEATS LSAQLTLLQR DTNGLSVENN ELKLRVQTME QQVHLQDALN DALKEEVQHL  300
KVLTGQGPSN GTSMMNYGSF GSNQQFYPNN QSMHTILAAQ QFQQLQIQSQ KQQQQQQHQQ  360
QQQQQQQQQQ QQQFQFQQQQ LYQFQQQQRL QQQEQQSGAS ELRRPMPSPG QKESVASPDL  420
EAPLTKD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0097s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198540.0AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAK2296660.0AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBankAY0857060.0AY085706.1 Arabidopsis thaliana clone 17213 mRNA, complete sequence.
GenBankBT0289650.0BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892318.10.0probable transcription factor PosF21
RefseqXP_020867846.10.0probable transcription factor PosF21
SwissprotQ040880.0POF21_ARATH; Probable transcription factor PosF21
TrEMBLD7KFA50.0D7KFA5_ARALL; Uncharacterized protein
STRINGscaffold_100594.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]