PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0070s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 37951 Da PI: 8.9924 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.2 | 1.3e-56 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+kkv + +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk Araha.0070s0003.1.p 17 LPPGFRFHPTDEELITHYLHKKVLDIGFSA-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDK 105 79**************************99.88***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrl Araha.0070s0003.1.p 106 EIFR-GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 142 ****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-65 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.053 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-30 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DIGFSAKAIG EVDLNKAEPW 60 ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180 RIGSYGTGSS LPPLIDSSPY NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSVQPDF 240 LQMIPLYQPQ SLNISENLQS SNPVLTQEQS VLQAMMENNR RQNFKTLSIS QETEVSNTDN 300 SSVFEFGRKR FDHQEVPSSS SGPVDLEPFW NY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-56 | 4 | 173 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0070s0003.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228027 | 0.0 | AK228027.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-54-D06. | |||
GenBank | BT006419 | 0.0 | BT006419.1 Arabidopsis thaliana At5g07680 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871283.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 0.0 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | D7M0L4 | 0.0 | D7M0L4_ARALL; ANAC079/ANAC080/ATNAC4 | ||||
STRING | fgenesh2_kg.6__736__AT5G07680.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 0.0 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Araha.0070s0003.1.p |
Publications ? help Back to Top | |||
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