PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.0018s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 27642.5 Da PI: 6.3039 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrr+C+k+Cv+apyf++eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ + Araha.0018s0007.1.p 7 PCGACKFLRRRCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVN 96 7*************************89************************************************************** PP DUF260 90 lkaelallkee 100 l+++l+ lk++ Araha.0018s0007.1.p 97 LQTQLEILKQQ 107 *******9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.432 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED 60 RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ SMMATDFPSI 120 ENPNYYQDTK LQYLQESHDL QHQHHQTTSN YQTEQHSDLK NIMTSCYHQN ETGTRSFIGA 180 GGDTTAASYY YNSSSGCSEE LKSVSTVGEF SKYSELDQQH LNTFNQYHDG CNDLLSECLG 240 YITYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 2 | 102 | 6 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 2 | 102 | 6 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.0018s0007.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473848 | 0.0 | AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881844.1 | 1e-164 | LOB domain-containing protein 17 | ||||
Swissprot | Q9SLB6 | 1e-150 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | D7LI62 | 1e-163 | D7LI62_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_4002383 | 1e-164 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-135 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.0018s0007.1.p |
Publications ? help Back to Top | |||
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