PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZT2TE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 341aa    MW: 39322.8 Da    PI: 6.7894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZT2TEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.6e-5571361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kkv++ +++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s 
  Aradu.ZT2TE   7 VPPGFRFHPTDEELVDYYLRKKVNSCRIDL-DVIKDVDLYKIEPWDLQElcRLGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102
                  69****************************.9***************954544442566**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  k+ l+g++ktLvfykgrap+g k+dW+mheyrle
  Aradu.ZT2TE 103 KHDLIGMRKTLVFYKGRAPNGLKSDWIMHEYRLE 136
                  8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-625158IPR003441NAC domain
PROSITE profilePS5100559.4417158IPR003441NAC domain
PfamPF023652.5E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNTFCHVPPG FRFHPTDEEL VDYYLRKKVN SCRIDLDVIK DVDLYKIEPW DLQELCRLGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGLKSDWIM HEYRLETDQT SAATPHEEGW VVCRVFKKRV TSIMRKMSDH DSPSCTWYDD  180
SSFMHQQPDH FDNSCSSSSK HQLIPNNNCD VFYQQQNNNL PLHHLPLLHQ TAALSNHNNN  240
PIMAPPFAAI NNNETTAFQE QGKSLIHHQA LLYGNLNEEQ ASSSAAAADW RLVDKFVSSQ  300
LREDHHVSKQ ELMMPENNNN NNNDNGASTS NSSCPIMDVW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-50515913169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZT2TE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150407e-72AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967798.10.0NAC domain-containing protein 26-like
RefseqXP_015967799.10.0NAC domain-containing protein 26-like
SwissprotF4HYV51e-111NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A445CYF70.0A0A445CYF7_ARAHY; Uncharacterized protein
STRINGGLYMA09G36600.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.11e-98Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]