PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.ZM6VG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 233aa MW: 25562.3 Da PI: 9.5503 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 197.3 | 2.2e-61 | 58 | 194 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 svyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydWe+kq+falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+++P Aradu.ZM6VG 58 SVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKP 155 79************************************************************************************************ PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++ G+fv+l+v n+l+++++++svPv+ aefav++++ Aradu.ZM6VG 156 HASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTA 194 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.4E-74 | 46 | 211 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.41E-64 | 50 | 212 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.8E-58 | 59 | 193 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MLKLSRLLPS ISGSSPRLLE PLSFTKPDPR DSAAFSTATN NKYAAKGYTS NRIFAPYSVY 60 KGKAAFSLSP CLPTFTKLDS GAVVVDRRGS MMMIFMHSIG ERKYDWENKQ RFALSATEVG 120 SLISMGPQDS CEFFHDPSML SSNAGQVRKS LSIKPHASSN GYFVSLTVVN NLLNTKDYLS 180 VPVTTAEFAV MKTACSFALP HIMGWDRMTH QSGGTVGLQS KVEPPALDLE WDK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 6e-86 | 50 | 209 | 8 | 167 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.ZM6VG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968430.1 | 1e-174 | single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1 | ||||
Swissprot | D9J034 | 6e-91 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A445CP26 | 1e-171 | A0A445CP26_ARAHY; Uncharacterized protein | ||||
STRING | XP_007147230.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-90 | WHIRLY 2 |