PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZI5LM
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 2149aa    MW: 235971 Da    PI: 8.8792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZI5LMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-0618451867527
                   --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                   +C++f++tGtC  G rCk +H++
  Aradu.ZI5LM 1845 ICPTFQATGTCTKGTRCKLHHPE 1867
                   6*****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6117361765IPR000571Zinc finger, CCCH-type
SMARTSM003560.01717361764IPR000571Zinc finger, CCCH-type
SMARTSM003569.717651789IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0717911817IPR000571Zinc finger, CCCH-type
SMARTSM003560.05117911816IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.12218181843IPR000571Zinc finger, CCCH-type
SMARTSM003561.818181844IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.56318451868IPR000571Zinc finger, CCCH-type
SMARTSM003560.4418451867IPR000571Zinc finger, CCCH-type
PfamPF056952.3E-1220632131IPR008543Uncharacterised protein family Ycf2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0009507Cellular Componentchloroplast
GO:0016607Cellular Componentnuclear speck
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2149 aa     Download sequence    Send to blast
MPPITTTRHP IKTNSPNSIP LTTLIVPSKK NTQSPTTTIS HFPNPPGLPA ESSRAILSPA  60
AIFLVSTLKH AGTLTLAVGS LPTVSFRGII PPELRQHREG VSLPPSAYPA EKIRYDPDRS  120
RWRLEYEYEG NPRKDEEFGC GSGNDANYHN YHRRGVGDLP PRHDLPNGGF GRAPPAMSRE  180
INIDLKPGGY VRGYSVEFED KIPRVGRRDG HGEGKRWLNE RRGPKELPDS RFELGTGEIG  240
FAKNVDDDFR VGTREEYGWE SGRYSGRGNN REFGHELWRP SLKKQVQKKS ALLRIQNAKP  300
SYRNREIEQL RNAGYSAESN TNDFRGKEQC GHVGHGMKQE EREGSPVELD ISFESNSLVA  360
KAIVTASTST VVTDTNMNSV SDADLTPSEK RKKVSVSDSD CSGLEAAKVS RDVVTLNSSS  420
CKVNDCSGSV NDLSLQNNVV NPCSQPCTRE TDSVKNEVAG GSTKIHSGKS SPRVVKKKKV  480
VKRVVKKVVG NPKSTMSNSR SANKVHGCVQ PDRVIPSSSS VSVPNKVEPC LEQKNITVDK  540
MSMPGHSSYN LSKDRNQLLE DRNGDLTLLS LGPHSRSREC ETDEDSDTQK GAARFESGLN  600
IPNSQSCAST GEAKKIDSEC LDANNSVHDL RRMPDTNMVP ELLNGSTSKI NDVGCDIKQL  660
CQNQESQSCE NYSNVRCPQN GFVIDVVDDS VLSSADNIGK SDRTNTDNSA SSVYGLISGD  720
LKGSTEKLTV TECGLTGESG FGLMVPTIIT KYAILEENPD VINPASSSAM SAPSNSGKIK  780
IHSGTDCIQN AIAVTQGSYS GLVNLEDGTA GQCSDITNDA VKDVSPSYAA ISSENCGKEE  840
PFSSSNLSVG FGEGDTNNMK KRKARTHSKF LHSKMEGISP KPVNSVSHAN DWDTASSVKV  900
KDACCSEVLD QSVQSLGSNL ESCLNGIITL HGKKELSEAE LCVRDNEIDD ANYLSLLSKG  960
IKVTTTSELS DAVVVSKSCA DFPVSFSDKQ APEKEVALSS MDVLFSAQSL SCSEDSRKLS  1020
DNFVGGSCDA RYANNETMSS DHFELKNSDF ASYSLREDLD IQFPLLDGEC KENGTQMQTD  1080
ILASGYNKGD MKDSLIHQQS IVSHPSDGDL EEDAPEAPSD VCSQGISEAP ERGNLNCTSI  1140
QDENNCGDIS AVEHGSDLPT CTSPIQHTNK IMKSANATGH SNPVERNLMR QSSQVNSKVS  1200
NNGPVSYFSE NGSKNTLGGA MPKTQKGRSF IISKSNSKTS ASSTHLSNPR TWRRSGNNSQ  1260
GSLPGNKLSP GKFLPKRQIL DRKGNFQNTS YIRKGNSLVR QPTTVSFTQI SSVNKSPLSL  1320
DELSKSTRSG SRIDVSDQLT LKTGVAEVPQ QSQRKPSLSI GTLSEENISS PLVEPPSSGC  1380
YENASDPRKL IDINDTPNSS KDDSNQYETP DNQSSPLSKL ENQVEANDGH ISSFSTKRIV  1440
YTKPKTNQLV ATSNSRDEKS QTAFSEGYYK RCKNQLVRNM NQTVAVPKAT LDSDGQGSCK  1500
VLCNRKLSKR QLHKVAGRSF KSLRASLVWT LCGKKSPKNG HNSWHSQRVL PQLFPWKRPT  1560
YLRSVVHNSA SCSNSTFLSA VRKMDTVYTR STRGFSLWKS KVLSVGGSSL KWSKSIEKNS  1620
KQANEEATLA VAAVERKKRE QKERIFPIGS VRYKMDPSRR TLQRISGDDE SLSSATADSG  1680
LVVKRAYIPR RLVIGNDEYV RIGNGNQLIR DPKKRTRKLA NEKVRWSLHT ARQRLARKQK  1740
YCQFFTRFGK CNKEGGKCPY VHDPSKIAVC TKFLNGLCST PSCKLTHKVI PERMPDCSYF  1800
LQGLCTNRNC PYRHVNVNPK ASVCEGFLKG YCADGNECRK KHSCICPTFQ ATGTCTKGTR  1860
CKLHHPEKQK GKKRKRSGDQ SNSNSRGRYF ASVPINVSEA GIVVIPGQRD LSDDLEGELT  1920
DYISLQDDYT KTVGQSLALT LCDSDSLSLQ LEDYEVNIKP TLLMKTKGTP RSSWSSVLQI  1980
TSGEQTNKIY STGSIYAIPV PPPNTITALL TSLIHIDCLS WNWNIGRRYT GAQSNDIEHV  2040
FHFFLRNKRA IFFAKWCSIS RGNSAKISSL VCNVSSNSQY DFTRSSFIQT DFSQLKGSFD  2100
QSRNFIRNEG LEYHTLTNQR DTTKRKIDSL FGFFLSSNGT NINRIKAIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C4e-191742186641167Cleavage and polyadenylation specificity factor subunit 4
6fuw_C4e-191742186641167Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118711876KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZI5LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-104AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935272.10.0uncharacterized protein LOC107461297 isoform X8
TrEMBLA0A445BSW10.0A0A445BSW1_ARAHY; Uncharacterized protein
STRINGXP_007161425.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010