PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZCT9N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 895aa    MW: 98785.1 Da    PI: 7.1425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZCT9NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18352451198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+
  Aradu.ZCT9N 352 FQKTLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGRLVM 447
                  99**************************555566778***************9989999999***9.********************766.6776777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Aradu.ZCT9N 448 GFRK 451
                  7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-30347459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-20349451IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-22350451No hitNo description
PROSITE profilePS5086311.152352453IPR003340B3 DNA binding domain
SMARTSM010191.8E-21352453IPR003340B3 DNA binding domain
PfamPF023621.1E-15352451IPR003340B3 DNA binding domain
PROSITE profilePS5105013.792580630IPR011124Zinc finger, CW-type
PfamPF074961.0E-11585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MASASSASSS TSKLCFNYDC KEFKSQPPKR GWTLRSGDLA ELCDRCGSVF EEGRFCEIFH  60
SNASGWRTCE TCRKRIHCGC IVSSHAFMLL DPGGIECLAC ARKHMVLPSN SPWHQSFSLQ  120
NRLPERIRDM SGKNWSQLAG SGPVPWKQAP SLFNSVSSSD LHPDVPSLVE LSNSIDKRYV  180
IERLPASTME KKNDDLSGIS VNWSVKLGTR ETMFMNDLAG IRNDDKPSSG LNMCQQPPSL  240
KEDSSSQPFG MSIPYASANE RNGQIGVTGS HSQQIQTPPG KHFSGLMQLA LDSSSEALVR  300
NGRPRADARG RNQLLPRYWP RCTDLELQQI SIEYPSIYNY DKVIQEIITP LFQKTLSASD  360
AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK ILDAKGKEWI FQFRFWPNNN SRMYVLEGVT  420
PCIQSMQLQA GDTVTFSRLE PEGRLVMGFR KASNATPSDQ DNETNKNGNG FSAPGEVELA  480
DPSSWSKVDK SGYIAKDALG SKSSMPRKRK LNILGSKSKR LKIESEDMIE LKITWQEAQG  540
LLRPPPSHVP SIVVIEGFEF EEYEDAPVLG KPTIFTDDNT GEKVQWAQCE DCLKWRKLPA  600
SALLQSKWTC SDNSWDQERS SCSAAQEMTT EEIENLLPPC NSGASNKMKA TKQESDNAEA  660
LEGLDTLANL AILGEGESLP TSAQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQSCTCNV  720
CLTVKRRFRT LMLRREKKQF EKEAETTRKK QKQPHSQPLH SSEIFLEDDS LPCSNPVDSS  780
SPNQNKEGNE VSDEDPNQVK SSTSPFKGQI DLNIQPEREE ESSPGSDSGG MMKSLHNAVE  840
RCTKPTLNSG IGDTSGSQSR QVADGVREDQ LSNGVALGSS SHGSKEHAQA LPMNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-603204551126B3 domain-containing transcription repressor VAL1
5yzz_C9e-603204551126B3 domain-containing transcription repressor VAL1
5z00_C9e-603204551126B3 domain-containing transcription repressor VAL1
5z00_G9e-603204551126B3 domain-containing transcription repressor VAL1
5z00_K9e-603204551126B3 domain-containing transcription repressor VAL1
5z00_M9e-603204551126B3 domain-containing transcription repressor VAL1
6j9a_A8e-603204552127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1505510PRKRKL
2507521KRKLNILGSKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZCT9N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943442.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A445BB990.0A0A445BB99_ARAHY; Uncharacterized protein
STRINGGLYMA13G31970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-159HSI2-like 1