PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z8T04

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 741aa MW: 83433.2 Da PI: 6.1239

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z8T04	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.2	2.3e-112	368	739	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d + a+++L+++++++sp gd qRla++f+ +L+arla+++s++yk l +++ts +++l+a++l+ ++P+ k+s+++ Aradu.Z8T04 368 LRTLLVLCAQAVAADDSKSAHEFLKQIKQHSSPFGDGSQRLAHMFADGLEARLAGTGSQIYKGLICKRTS---AADVLKAYHLYLAACPFRKISNFMS 462 5789***************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I + + + rvH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g +e++ etg+rLa +Ae+++vpfe+n+ +ak++e+++leeL Aradu.Z8T04 463 NITIRTSSADSMRVHVIDFGILYGFQWPTFIQRLSWRSGGPPKLRITGIDFPQPGfrPAERIVETGRRLAAYAETFNVPFEYNA-IAKKWETIQLEEL 559 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E ++V + ++ ++lldesv +es+r+++L+l+++++P+++++ + n++ F++rf eal +ys+lfd+le+ +pre+ er+ +E+e++gr Aradu.Z8T04 560 KIDRDEYVVVTCFYRGKNLLDESVVVESPRNKFLNLIRKINPDIFIHGIINGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGR 657 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ nv+aceg er+er et+++W+ r+ +aGF++ p++ k a +r + + ++e+ ++lv+gWk+r ++++S+W+ Aradu.Z8T04 658 EALNVIACEGCERVERPETYKQWQVRILRAGFTQQPFDPKLIGMAMDKVRSGFHKDFLIDEDGQWLVQGWKGRIIYALSCWK 739 ***********************************99988877777655566***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.789	342	719	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-110	368	739	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MIMDPHLHGF GGSTKEFRLE NQSLPIVQNQ RFENGLFDQS REFGYLQSNL LPPANNTHSS 60 SILTNDEPSP EDCDFSDAIL GYINQILMEE DMEDKTCMLQ DSLDLQVAEK SLYEVIGEKY 120 PSQPLGINPN DGEGVNDLFE NYGSDLVNDG DLRSIVMSSS FLRNSEEVHR QNFQGNSISQ 180 SSHSSSNSVI SSLEGPVESP NSILQVPDMS SESQSILQFQ KGVEEASKFL PSGNGLFSNF 240 SAAKLSSPLE PKLGTNALSV KVEKDDGESF LAGSKGRKHS DREEGDDEEN RSSKQAAVYL 300 EPTLRSDMID IFLLHSAGDG KQHYMARRDA LQNKNTDKML PRNGKSKASK TGKGRGKKQN 360 GRKEVVDLRT LLVLCAQAVA ADDSKSAHEF LKQIKQHSSP FGDGSQRLAH MFADGLEARL 420 AGTGSQIYKG LICKRTSAAD VLKAYHLYLA ACPFRKISNF MSNITIRTSS ADSMRVHVID 480 FGILYGFQWP TFIQRLSWRS GGPPKLRITG IDFPQPGFRP AERIVETGRR LAAYAETFNV 540 PFEYNAIAKK WETIQLEELK IDRDEYVVVT CFYRGKNLLD ESVVVESPRN KFLNLIRKIN 600 PDIFIHGIIN GAFNAPFFVT RFREALFHYS SLFDMLETIV PREDWERMLI EKEIFGREAL 660 NVIACEGCER VERPETYKQW QVRILRAGFT QQPFDPKLIG MAMDKVRSGF HKDFLIDEDG 720 QWLVQGWKGR IIYALSCWKP A

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MIMDPHLHGF GGSTKEFRLE NQSLPIVQNQ RFENGLFDQS REFGYLQSNL LPPANNTHSS  60
SILTNDEPSP EDCDFSDAIL GYINQILMEE DMEDKTCMLQ DSLDLQVAEK SLYEVIGEKY  120
PSQPLGINPN DGEGVNDLFE NYGSDLVNDG DLRSIVMSSS FLRNSEEVHR QNFQGNSISQ  180
SSHSSSNSVI SSLEGPVESP NSILQVPDMS SESQSILQFQ KGVEEASKFL PSGNGLFSNF  240
SAAKLSSPLE PKLGTNALSV KVEKDDGESF LAGSKGRKHS DREEGDDEEN RSSKQAAVYL  300
EPTLRSDMID IFLLHSAGDG KQHYMARRDA LQNKNTDKML PRNGKSKASK TGKGRGKKQN  360
GRKEVVDLRT LLVLCAQAVA ADDSKSAHEF LKQIKQHSSP FGDGSQRLAH MFADGLEARL  420
AGTGSQIYKG LICKRTSAAD VLKAYHLYLA ACPFRKISNF MSNITIRTSS ADSMRVHVID  480
FGILYGFQWP TFIQRLSWRS GGPPKLRITG IDFPQPGFRP AERIVETGRR LAAYAETFNV  540
PFEYNAIAKK WETIQLEELK IDRDEYVVVT CFYRGKNLLD ESVVVESPRN KFLNLIRKIN  600
PDIFIHGIIN GAFNAPFFVT RFREALFHYS SLFDMLETIV PREDWERMLI EKEIFGREAL  660
NVIACEGCER VERPETYKQW QVRILRAGFT QQPFDPKLIG MAMDKVRSGF HKDFLIDEDG  720
QWLVQGWKGR IIYALSCWKP A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-43	375	740	26	380	Protein SCARECROW
5b3h_A	5e-43	375	740	25	379	Protein SCARECROW
5b3h_D	5e-43	375	740	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z8T04

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960728.1	0.0	scarecrow-like protein 9
Refseq	XP_015960729.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A445DGG3	0.0	A0A445DGG3_ARAHY; Uncharacterized protein
STRING	GLYMA18G39920.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein