PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Z2UCJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 435aa MW: 49191.4 Da PI: 9.3425 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 27.7 | 7.5e-09 | 67 | 162 | 9 | 97 |
DUF260 9 rrkCakdCvlapyfpaeqp...kkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + +C+++C++++ fp e + +a++ ++F + + k+l++ +e + ++ + l + A + + Pv+G +g +lk++++l+ ++++l ++ Aradu.Z2UCJ 67 KDRCTENCPYRRFFPPEAEgsrTLYAILTEFFPPQCIKKFLSRDivnrDEPTFKKHLLGLRWMALQWKKRPVNGPYGSYLKIKKKLRIAQKKLRRM 162 459***********87653333778999************98753432333347778899****************************99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.938 | 58 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-6 | 67 | 162 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDAYDGTVRL GAINLKQHDL RAGAAGEFDS GPDVSVSSPV TRQKAAAAKQ FIENHYKNYL 60 QGLQDRKDRC TENCPYRRFF PPEAEGSRTL YAILTEFFPP QCIKKFLSRD IVNRDEPTFK 120 KHLLGLRWMA LQWKKRPVNG PYGSYLKIKK KLRIAQKKLR RMRFMHQVHR MRPIRGVRSE 180 PWKDRERWSI LQRWRSFTSN SIGYVHTAGA TVVHQFCHLG SFSFLGGGSV LNGSEGAAVV 240 ATAIKRNIME LQLGDLNEPT LLQLLVIFTT CHENETIIHQ FCHLGSFSFL GGGSVKKCWG 300 SWWSLYWCFG STHKSNKRIG HAVLVPEPVA PADPAATVPP NPSTDYATAD RNCATLPQIC 360 IIPLSRTKHI TQVVAAGLNL PFEEVPQCNV VEDLCERYFG PLFELLSHDK DPGPNGNDQV 420 DEANIVKQIR EVENY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 152 | KIKKKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Z2UCJ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 2e-35 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |